Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 9.0e-68 260.4 156 100.0
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 9.7e-38 160.6 163 71.2
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 6.7e-31 137.9 162 60.5
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 5.7e-30 134.8 159 59.7
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 1.3e-29 133.7 169 62.1
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 1.1e-28 130.6 143 65.0
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 1.2e-27 127.1 165 60.0
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 2.6e-27 125.9 111 66.7
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 3.4e-27 125.6 152 63.2
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 1.3e-26 123.6 156 60.9
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 1.7e-26 123.2 157 59.2
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 2.2e-26 122.9 142 59.2
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 3.8e-26 122.1 156 60.3
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 5.0e-26 121.7 139 64.0
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 5.0e-26 121.7 163 58.3
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 5.0e-26 121.7 160 53.1
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 6.5e-26 121.3 167 54.5
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.4e-25 120.2 163 57.1
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.4e-25 120.2 159 58.5
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 1.9e-25 119.8 152 59.2
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 3.2e-25 119.0 140 65.7
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 4.2e-25 118.6 150 58.7
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 5.5e-25 118.2 156 62.8
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 5.5e-25 118.2 161 60.2
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 7.2e-25 117.9 166 53.0
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.2e-24 117.1 150 58.7
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 1.2e-24 117.1 160 60.0
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 2.1e-24 116.3 156 60.3
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 2.7e-24 115.9 156 61.5
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 4.7e-24 115.2 106 65.1
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 6.1e-24 114.8 161 59.6
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 6.1e-24 114.8 156 57.1
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 7.9e-24 114.4 142 59.9
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 7.9e-24 114.4 156 59.0
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 7.9e-24 114.4 153 53.6
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.4e-23 113.6 150 56.7
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 1.8e-23 113.2 104 76.9
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 2.3e-23 112.8 151 59.6
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 3.0e-23 112.5 153 56.9
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 3.9e-23 112.1 156 56.4
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 3.9e-23 112.1 153 49.7
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 5.1e-23 111.7 139 61.9
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 5.1e-23 111.7 107 74.8
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 6.7e-23 111.3 106 69.8
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 6.7e-23 111.3 146 61.0
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 6.7e-23 111.3 157 56.7
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 8.8e-23 110.9 145 63.4
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 8.8e-23 110.9 156 58.3
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 1.5e-22 110.2 155 58.7
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 2.0e-22 109.8 160 56.2
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 2.0e-22 109.8 160 56.2
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 2.0e-22 109.8 106 72.6
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 2.6e-22 109.4 157 58.6
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 2.6e-22 109.4 157 58.6
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 2.6e-22 109.4 157 58.6
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 2.6e-22 109.4 156 57.1
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 4.4e-22 108.6 159 52.2
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 5.7e-22 108.2 111 67.6
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 7.4e-22 107.8 163 57.7
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 1.7e-21 106.7 151 55.6
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 2.2e-21 106.3 146 53.4
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 2.8e-21 105.9 101 75.2
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 2.8e-21 105.9 161 52.2
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 3.7e-21 105.5 152 56.6
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 3.7e-21 105.5 159 49.1
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 6.3e-21 104.8 157 56.1
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 8.2e-21 104.4 149 47.7
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 1.4e-20 103.6 93 79.6
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.4e-20 103.6 157 58.0
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 2.4e-20 102.8 159 57.9
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.1e-20 102.4 94 70.2
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 4.1e-20 102.1 82 79.3
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 4.1e-20 102.1 82 79.3
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 5.3e-20 101.7 161 56.5
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 7.0e-20 101.3 155 57.4
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 1.2e-19 100.5 156 56.4
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 1.5e-19 100.1 160 55.6
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 2.0e-19 99.8 154 59.1
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 2.0e-19 99.8 101 70.3
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 2.6e-19 99.4 157 54.1
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 3.5e-19 99.0 177 53.1
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.3e-18 97.1 94 69.1
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 5.0e-18 95.1 162 54.9
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 6.5e-18 94.7 87 75.9
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 6.5e-18 94.7 87 75.9
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 6.5e-18 94.7 118 62.7
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 6.5e-18 94.7 162 47.5
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 6.5e-18 94.7 156 53.8
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 1.1e-17 94.0 163 46.0
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 2.5e-17 92.8 65 66.2
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 7.2e-17 91.3 118 63.6
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 7.2e-17 91.3 87 71.3
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 7.2e-17 91.3 87 71.3
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 7.2e-17 91.3 144 52.1
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 9.4e-17 90.9 97 71.1
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 1.2e-16 90.5 108 64.8
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 1.2e-16 90.5 168 42.9
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 2.7e-16 89.4 118 64.4
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 2.7e-16 89.4 86 70.9
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 2.7e-16 89.4 86 70.9
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 2.7e-16 89.4 92 64.1
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 1.0e-15 87.4 97 68.0
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 1.0e-15 87.4 153 52.9
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 1.4e-15 87.0 87 66.7
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 1.4e-15 87.0 151 52.3
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 1.8e-15 86.7 157 39.5
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 2.3e-15 86.3 159 55.3
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.0e-15 85.9 149 49.0
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 5.2e-15 85.1 60 81.7
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 5.2e-15 85.1 60 81.7
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 6.7e-15 84.7 155 40.0
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 1.5e-14 83.6 155 45.2
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 2.0e-14 83.2 125 54.4
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 2.0e-14 83.2 125 54.4
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 2.0e-14 83.2 125 54.4
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 2.0e-14 83.2 125 54.4
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 2.0e-14 83.2 125 54.4
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 2.0e-14 83.2 156 47.4
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 2.6e-14 82.8 125 54.4
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 2.6e-14 82.8 166 48.8
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 4.4e-14 82.0 172 45.9
Oeu026227.1 Olea europaea HOM05D004792 ORTHO05D005789 4.4e-14 82.0 101 61.4
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 9.7e-14 80.9 110 61.8
Solyc10g009190.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 2.2e-13 79.7 110 58.2
Sopen10g004980 Solanum pennellii HOM05D004792 ORTHO05D005789 2.2e-13 79.7 110 58.2
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 2.8e-13 79.3 144 47.2
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 6.3e-13 78.2 151 45.0
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 8.2e-13 77.8 155 44.5
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 8.2e-13 77.8 111 49.5
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 8.2e-13 77.8 84 61.9
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 1.8e-12 76.6 157 54.8
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 3.1e-12 75.9 66 57.6
Dinv40512 Davidia involucrata HOM05D004792 ORTHO05D005789 4.1e-12 75.5 75 70.7
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 9.1e-12 74.3 63 58.7
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 2.0e-11 73.2 155 40.0
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 2.0e-11 73.2 105 61.0
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 2.0e-11 73.2 63 61.9
PGSC0003DMG400010821 Solanum tuberosum HOM05D004792 ORTHO05D005789 5.9e-11 71.6 110 57.3
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 1.0e-10 70.9 158 45.6
Lalb_Chr18g0059871 Lupinus albus HOM05D004792 ORTHO05D005789 1.0e-10 70.9 122 50.0
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 1.0e-10 70.9 100 42.0
Thhalv10022963m.g Eutrema salsugineum HOM05D010802 ORTHO05D012953 1.7e-10 70.1 64 45.3
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 3.8e-10 68.9 59 59.3
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 1.1e-09 67.4 158 48.7
unitig_26.g9746 Utricularia gibba HOM05D004792 ORTHO05D005789 2.5e-09 66.2 105 37.1
Sp3g32430 Schrenkiella parvula HOM05D010802 ORTHO05D012953 5.5e-09 65.1 65 43.1
CARHR051350 Cardamine hirsuta HOM05D004792 ORTHO05D005789 1.2e-08 63.9 163 36.8
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 3.6e-08 62.4 160 48.1
BcaC04g22871 Brassica carinata HOM05D010802 ORTHO05D012953 3.0e-07 59.3 65 44.6
BolC9t54342H Brassica oleracea HOM05D010802 ORTHO05D012953 3.0e-07 59.3 65 44.6
A09p12160 Brassica napus HOM05D010802 ORTHO05D012953 1.5e-06 57.0 65 43.1
C09p14380 Brassica napus HOM05D010802 ORTHO05D012953 1.5e-06 57.0 65 43.1
BraA09t36860Z Brassica rapa HOM05D010802 ORTHO05D012953 1.5e-06 57.0 65 43.1
Zm00001eb299240 Zea mays HOM05D004792 ORTHO05D005789 1.5e-06 57.0 98 41.8
Zm00001eb092170 Zea mays HOM05D004792 ORTHO05D005789 5.7e-06 55.1 98 38.8
Os07g0123900 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 7.5e-06 54.7 92 50.0


User provided reference genes

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