Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 1.5e-40 169.1 87 100.0
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 4.9e-23 110.9 88 68.2
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 4.9e-23 110.9 88 68.2
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 4.9e-23 110.9 88 68.2
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 4.9e-23 110.9 89 69.7
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 6.4e-23 110.5 88 68.2
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 4.1e-22 107.8 83 72.3
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 4.1e-22 107.8 88 63.6
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 5.4e-22 107.5 90 63.3
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 9.2e-22 106.7 87 69.0
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.6e-21 105.9 90 65.6
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 2.1e-21 105.5 87 66.7
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 2.1e-21 105.5 89 68.5
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 3.5e-21 104.8 90 63.3
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 7.8e-21 103.6 87 73.6
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 2.3e-20 102.1 87 65.5
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 2.3e-20 102.1 87 65.5
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 3.9e-20 101.3 84 69.0
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 8.6e-20 100.1 92 58.7
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 9.5e-19 96.7 90 63.3
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 4.7e-18 94.4 86 64.0
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 1.1e-17 93.2 91 57.1
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 1.4e-17 92.8 85 67.1
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 8.9e-17 90.1 87 58.6
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 4.4e-16 87.8 87 60.9
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 1.3e-15 86.3 90 60.0
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 2.2e-15 85.5 75 64.0
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 3.8e-15 84.7 94 55.3
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 3.8e-15 84.7 91 53.8
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 6.4e-15 84.0 93 52.7
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 8.4e-15 83.6 87 55.2
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 8.4e-15 83.6 92 54.3
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 1.1e-14 83.2 89 57.3
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 1.1e-14 83.2 90 60.0
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 9.2e-14 80.1 93 53.8
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 1.6e-13 79.3 72 68.1
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 2.7e-13 78.6 98 49.0
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 2.7e-13 78.6 92 48.9
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 3.5e-13 78.2 96 52.1
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 3.5e-13 78.2 85 54.1
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 6.0e-13 77.4 95 50.5
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 1.7e-12 75.9 86 50.0
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 1.7e-12 75.9 86 54.7
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 2.3e-12 75.5 95 49.5
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 3.9e-12 74.7 98 51.0
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 3.9e-12 74.7 90 51.1
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 3.9e-12 74.7 86 48.8
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 7.3e-11 70.5 90 47.8
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 9.6e-11 70.1 92 50.0
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 9.6e-11 70.1 80 46.2
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 1.3e-10 69.7 102 45.1
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.6e-10 69.3 86 52.3
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 2.8e-10 68.6 73 57.5
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 3.6e-10 68.2 67 61.2
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 3.6e-10 68.2 67 61.2
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 4.8e-10 67.8 73 56.2
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.1e-09 66.6 70 55.7
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 1.8e-09 65.9 89 44.9
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.8e-09 65.9 89 44.9
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 2.4e-09 65.5 86 50.0
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 4.0e-09 64.7 83 48.2
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 9.0e-09 63.5 78 50.0
SHI24864 Sapria himalayana HOM05D007836 ORTHO05D009876 3.4e-08 61.6 74 54.1
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 5.8e-08 60.8 88 46.6
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 5.8e-08 60.8 76 47.4
Cc05_g06130 Coffea canephora HOM05D000831 ORTHO05D000660 7.6e-08 60.5 83 43.4
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 9.9e-08 60.1 67 55.2
CiPaw.03G168900 Carya illinoinensis HOM05D000831 ORTHO05D000660 1.3e-07 59.7 91 42.9
CiPaw.03G169000 Carya illinoinensis HOM05D000831 ORTHO05D000660 1.3e-07 59.7 91 42.9
Cc05_g06150 Coffea canephora HOM05D000831 ORTHO05D000660 1.3e-07 59.7 83 43.4
CiPaw.03G169100 Carya illinoinensis HOM05D000831 ORTHO05D000660 1.7e-07 59.3 91 42.9
CANSAT11G0733 Cannabis sativa HOM05D000831 ORTHO05D000660 2.2e-07 58.9 73 45.2
Gohir.A04G106066 Gossypium hirsutum HOM05D007836 ORTHO05D009876 2.2e-07 58.9 89 47.2
Cc05_g06160 Coffea canephora HOM05D000831 ORTHO05D000660 2.9e-07 58.5 83 44.6
Gorai.010G254100 Gossypium raimondii HOM05D007836 ORTHO05D009876 3.8e-07 58.2 72 47.2
Prupe.3G229000 Prunus persica HOM05D000831 ORTHO05D000660 3.8e-07 58.2 91 39.6
CiPaw.03G169200 Carya illinoinensis HOM05D000831 ORTHO05D000660 4.9e-07 57.8 91 41.8
CiPaw.03G169400 Carya illinoinensis HOM05D000831 ORTHO05D000660 4.9e-07 57.8 91 41.8
Gohir.D06G211966 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.9e-07 57.8 73 46.6
Prupe.3G229400 Prunus persica HOM05D000831 ORTHO05D000660 4.9e-07 57.8 91 38.5
Prupe.3G229500 Prunus persica HOM05D000831 ORTHO05D000660 4.9e-07 57.8 91 39.6
TPR.G18070 Trifolium pratense HOM05D000831 ORTHO05D000660 4.9e-07 57.8 80 45.0
Prupe.3G229700 Prunus persica HOM05D000831 ORTHO05D000660 6.4e-07 57.4 81 40.7
CiPaw.03G169300 Carya illinoinensis HOM05D000831 ORTHO05D000660 8.4e-07 57.0 86 40.7
Manes.12G082200 Manihot esculenta HOM05D007836 ORTHO05D009876 1.1e-06 56.6 70 48.6
ATR0693G408 Amborella trichopoda HOM05D007836 ORTHO05D009876 1.4e-06 56.2 43 69.8
Cc00_g31440 Coffea canephora HOM05D000831 ORTHO05D000660 1.4e-06 56.2 78 42.3
Psat5g268680 Pisum sativum HOM05D000831 ORTHO05D000660 1.4e-06 56.2 81 46.9
QL08p017373 Quercus lobata HOM05D000831 ORTHO05D000660 1.4e-06 56.2 86 41.9
QL08p017396 Quercus lobata HOM05D000831 ORTHO05D000660 1.4e-06 56.2 86 41.9
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 1.9e-06 55.8 91 42.9
CANSAT11G1852 Cannabis sativa HOM05D000831 ORTHO05D000660 2.4e-06 55.5 78 43.6
CAN.G508.11 Capsicum annuum HOM05D000831 ORTHO05D000660 2.4e-06 55.5 71 45.1
Haze_09537 Corylus avellana HOM05D000831 ORTHO05D000660 2.4e-06 55.5 79 41.8
CsaV3_6G049650 Cucumis sativus L. HOM05D007836 ORTHO05D009876 2.4e-06 55.5 84 41.7
Eucgr.E03810 Eucalyptus grandis HOM05D038013 ORTHO05D009876 2.4e-06 55.5 76 48.7
Glyma.12G200700 Glycine max HOM05D000831 ORTHO05D000660 2.4e-06 55.5 87 44.8
Ah.06g183460 Amaranthus hybridus HOM05D000831 ORTHO05D000660 3.2e-06 55.1 74 47.3
BcaC08g43865 Brassica carinata HOM05D000831 ORTHO05D000660 3.2e-06 55.1 58 53.4
CAN.G508.8 Capsicum annuum HOM05D000831 ORTHO05D000660 3.2e-06 55.1 83 42.2
CiPaw.03G168600 Carya illinoinensis HOM05D000831 ORTHO05D000660 3.2e-06 55.1 86 40.7
Ca_01539_v3 Cicer arietinum L. HOM05D000831 ORTHO05D000660 3.2e-06 55.1 88 45.5
Duzib213G0223 Durio zibethinus HOM05D000831 ORTHO05D000660 3.2e-06 55.1 83 39.8
Glyma.13G301500 Glycine max HOM05D000831 ORTHO05D000660 3.2e-06 55.1 75 46.7
QL08p017375 Quercus lobata HOM05D000831 ORTHO05D000660 3.2e-06 55.1 86 40.7
QL08p017381 Quercus lobata HOM05D000831 ORTHO05D000660 3.2e-06 55.1 86 40.7
Sabra19G0117500 Salix brachista HOM05D000831 ORTHO05D000660 3.2e-06 55.1 72 45.8
Aa31LG9G11730 Aethionema arabicum HOM05D000831 ORTHO05D000660 4.2e-06 54.7 59 54.2
Ah.06g183450 Amaranthus hybridus HOM05D000831 ORTHO05D000660 4.2e-06 54.7 74 45.9
CANSAT11G1378 Cannabis sativa HOM05D000831 ORTHO05D000660 4.2e-06 54.7 82 43.9
CARHR032800 Cardamine hirsuta HOM05D000831 ORTHO05D000660 4.2e-06 54.7 58 56.9
Duzib213G0288 Durio zibethinus HOM05D000831 ORTHO05D000660 4.2e-06 54.7 83 39.8
Prupe.3G229800 Prunus persica HOM05D000831 ORTHO05D000660 4.2e-06 54.7 91 37.4
QL08p017355 Quercus lobata HOM05D000831 ORTHO05D000660 4.2e-06 54.7 86 40.7
ATR0693G322 Amborella trichopoda HOM05D017888 ORTHO05D009876 5.4e-06 54.3 83 45.8
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 5.4e-06 54.3 58 51.7
Carub.0001s3178 Capsella rubella HOM05D000831 ORTHO05D000660 5.4e-06 54.3 31 80.6
Nitab4.5_0007263g0020 Nicotiana tabacum HOM05D000831 ORTHO05D000660 5.4e-06 54.3 87 37.9
Phvul.005G108200 Phaseolus vulgaris HOM05D000831 ORTHO05D000660 5.4e-06 54.3 81 43.2
Phvul.005G108300 Phaseolus vulgaris HOM05D000831 ORTHO05D000660 5.4e-06 54.3 81 43.2
AUR62015588 Chenopodium quinoa HOM05D000831 ORTHO05D000660 7.1e-06 53.9 79 43.0
Ciclev10017345m.g Citrus clementina HOM05D000831 ORTHO05D000660 7.1e-06 53.9 82 46.3
ECA246G0084 Erigeron canadensis HOM05D000831 ORTHO05D000660 7.1e-06 53.9 77 44.2
Glyma.06G297900 Glycine max HOM05D000831 ORTHO05D000660 7.1e-06 53.9 79 46.8
Glyma.06G298900 Glycine max HOM05D000831 ORTHO05D000660 7.1e-06 53.9 79 46.8
Glyma.U031111 Glycine max HOM05D000831 ORTHO05D000660 7.1e-06 53.9 80 46.2
Sabra19G0136200 Salix brachista HOM05D000831 ORTHO05D000660 7.1e-06 53.9 72 45.8
TPR.G18062 Trifolium pratense HOM05D000831 ORTHO05D000660 7.1e-06 53.9 80 40.0
TAR627G0025 Trochodendron aralioides HOM05D018535 ORTHO05D019031 7.1e-06 53.9 68 45.6
BcaB07g32979 Brassica carinata HOM05D000831 ORTHO05D000660 9.3e-06 53.5 58 53.4
BcaC08g43861 Brassica carinata HOM05D000831 ORTHO05D000660 9.3e-06 53.5 58 53.4
Carub.0001s3157 Capsella rubella HOM05D000831 ORTHO05D000660 9.3e-06 53.5 25 92.0
Cc05_g06120 Coffea canephora HOM05D000831 ORTHO05D000660 9.3e-06 53.5 84 42.9
Eucgr.E03690 Eucalyptus grandis HOM05D038013 ORTHO05D009876 9.3e-06 53.5 76 48.7
Nitab4.5_0002791g0060 Nicotiana tabacum HOM05D000831 ORTHO05D000660 9.3e-06 53.5 90 40.0
Potri.019G116500 Populus trichocarpa HOM05D000831 ORTHO05D000660 9.3e-06 53.5 76 43.4
PGR142G0205 Punica granatum HOM05D000831 ORTHO05D000660 9.3e-06 53.5 88 39.8
Sp6g07160 Schrenkiella parvula HOM05D000831 ORTHO05D000660 9.3e-06 53.5 53 54.7
Sed0004298 Sechium edule HOM05D024319 ORTHO05D025083 9.3e-06 53.5 69 46.4
Thecc.02G171000 Theobroma cacao HOM05D000831 ORTHO05D000660 9.3e-06 53.5 80 46.2


User provided reference genes

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