Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 4.3e-175 617.8 305 100.0
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 5.3e-157 557.8 304 90.1
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.3e-155 553.1 305 88.2
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.6e-153 546.2 305 86.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 3.6e-153 545.0 305 85.2
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.6e-153 545.0 305 87.5
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 4.6e-153 544.7 305 87.2
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.4e-152 543.1 305 85.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.8e-152 542.7 305 86.6
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.3e-152 542.3 300 88.0
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.0e-152 542.0 305 85.2
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.1e-152 541.2 305 86.2
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 6.7e-152 540.8 305 86.9
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.1e-151 540.0 305 85.9
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.1e-151 540.0 305 86.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.5e-151 539.7 305 85.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 85.9
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 86.2
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 84.9
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 85.2
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 84.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 84.9
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 85.2
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 85.2
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 83.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 83.9
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 4.1e-149 531.6 307 83.7
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 84.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 83.6
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 85.2
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 85.2
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 85.2
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 83.6
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 85.2
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 84.6
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 84.6
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 84.9
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 84.3
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 83.6
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 83.9
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 83.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 83.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 82.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.0
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 84.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 83.3
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 83.9
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 83.6
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 83.9
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.0
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 83.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 82.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 84.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 84.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.6
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.3
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 82.6
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 3.2e-146 521.9 301 85.4
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 3.2e-146 521.9 308 83.1
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 83.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 83.3
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 83.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 83.3
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.3
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 82.6
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 82.0
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 81.6
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 81.6
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 81.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 3.0e-144 515.4 326 78.2
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 81.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 82.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 81.0
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 8.8e-144 513.8 302 83.1
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 81.0
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 81.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 2.8e-142 508.8 301 83.1
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 81.3
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.1e-141 506.9 388 68.6
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.1e-141 506.9 330 77.0
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 80.0
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 5.3e-141 504.6 303 80.5
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 7.0e-141 504.2 305 78.7
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 7.0e-141 504.2 303 79.9
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 7.0e-141 504.2 372 69.9
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 3.5e-140 501.9 302 80.8
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.7e-139 499.6 305 78.0
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 79.7
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 5.0e-139 498.0 307 78.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 5.5e-138 494.6 307 77.5
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.7e-137 492.3 307 78.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.6e-137 491.9 307 77.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 8.0e-137 490.7 305 77.7
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 4.0e-136 488.4 306 77.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 4.0e-136 488.4 306 77.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 4.0e-136 488.4 306 77.5
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.0e-136 488.4 304 78.0
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 8.8e-136 487.3 307 76.9
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 77.4
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.6e-135 485.7 306 77.1
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 9.7e-135 483.8 307 76.2
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 4.8e-134 481.5 303 77.6
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 8.2e-134 480.7 305 75.1
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.8e-133 479.6 305 76.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.7e-131 473.0 304 75.7
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.9e-131 472.2 304 75.3
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.9e-131 472.2 304 75.3
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 3.8e-131 471.9 305 76.7
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 9.4e-130 467.2 304 74.7
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 8.0e-121 437.6 304 68.4
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.3e-120 436.0 306 68.6
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.0e-120 435.6 300 71.0
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 8.8e-120 434.1 304 68.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.4e-112 410.2 305 68.9
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 6.8e-112 407.9 303 65.0
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 2.2e-110 402.9 235 83.8
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 6.4e-110 401.4 246 80.1
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 7.3e-106 387.9 303 63.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.9e-102 375.9 225 80.4
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.4e-101 372.9 311 60.8
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 8.6e-99 364.4 225 81.3
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.9e-90 336.7 228 73.2
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 3.3e-90 335.9 208 76.9
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 6.9e-72 275.0 160 83.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 9.3e-69 264.6 143 88.8
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.7e-68 263.1 149 83.2
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 4.6e-68 262.3 181 72.9
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.3e-59 234.2 153 73.9
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.4e-56 224.2 299 48.8
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.8e-56 223.8 154 71.4
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.8e-38 162.9 125 64.0
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.1e-37 161.4 79 92.4
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.4e-37 161.0 83 88.0
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.4e-37 161.0 136 55.1
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.9e-37 160.6 80 88.8
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 4.2e-37 159.5 80 90.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.2e-37 158.7 89 82.0
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.1e-36 157.1 205 46.8
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 8.8e-35 151.8 299 33.8
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.3e-33 147.9 305 33.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 3.6e-28 129.8 79 78.5
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 7.4e-26 122.1 76 75.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 6.5e-22 109.0 58 84.5
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 5.5e-21 105.9 64 75.0
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 4.7e-20 102.8 60 80.0
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.4e-16 91.3 295 28.1
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.4e-16 90.5 69 71.0
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 5.0e-14 82.8 241 27.4


User provided reference genes

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