Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 3.8e-142 508.4 313 100.0
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 4.7e-92 342.0 311 73.6
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 6.3e-89 331.6 311 71.7
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.7e-57 227.3 347 45.8
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 5.1e-54 215.7 314 58.6
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 5.3e-51 205.7 313 46.6
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 2.6e-50 203.4 313 45.4
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 3.4e-50 203.0 335 43.3
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 7.6e-50 201.8 347 43.5
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 1.7e-49 200.7 312 44.2
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 4.2e-48 196.1 315 43.5
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 9.3e-48 194.9 341 50.4
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 4.6e-47 192.6 318 45.6
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 3.9e-46 189.5 322 47.5
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 5.1e-46 189.1 313 47.6
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 3.3e-45 186.4 316 42.4
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 4.3e-45 186.0 313 44.7
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 7.3e-45 185.3 320 42.8
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 9.6e-45 184.9 315 43.5
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 1.3e-44 184.5 320 48.1
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 2.1e-44 183.7 351 42.2
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 2.1e-44 183.7 319 43.3
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 2.1e-44 183.7 314 42.0
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 3.6e-44 183.0 346 40.5
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.8e-43 180.6 327 44.6
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 2.6e-42 176.8 314 51.0
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 2.6e-42 176.8 312 41.7
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 7.6e-42 175.3 313 46.3
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.9e-41 172.6 311 46.3
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 1.1e-40 171.4 334 40.7
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 3.2e-40 169.9 320 44.7
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 3.2e-40 169.9 311 41.8
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 4.2e-40 169.5 321 43.9
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 4.2e-40 169.5 321 43.9
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 4.2e-40 169.5 316 39.2
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 2.7e-39 166.8 319 40.8
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 4.6e-39 166.0 317 39.4
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 4.6e-39 166.0 313 42.8
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 4.6e-39 166.0 326 49.1
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 7.9e-39 165.2 289 40.8
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 1.0e-38 164.9 312 39.4
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 6.7e-38 162.2 315 41.6
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 8.7e-38 161.8 322 39.4
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 8.7e-38 161.8 308 39.3
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 1.1e-37 161.4 340 39.1
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 1.5e-37 161.0 334 43.4
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 1.6e-36 157.5 311 41.8
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 1.5e-34 151.0 314 38.5
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 2.0e-34 150.6 311 39.9
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 2.6e-34 150.2 316 38.0
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 3.4e-34 149.8 332 42.2
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 5.8e-34 149.1 316 39.6
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 5.8e-34 149.1 313 40.3
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 1.3e-33 147.9 316 38.0
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 4.2e-32 142.9 315 35.6
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 9.3e-32 141.7 313 41.9
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 2.1e-31 140.6 310 38.7
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 2.7e-31 140.2 313 43.8
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 8.7e-30 135.2 317 36.0
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 4.3e-29 132.9 312 37.2
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 4.3e-29 132.9 320 38.8
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 5.6e-29 132.5 312 37.5
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 2.4e-27 127.1 332 41.6
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 6.9e-27 125.6 318 47.2
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 9.0e-27 125.2 314 45.2
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 1.0e-25 121.7 334 38.6
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 1.3e-25 121.3 328 35.4
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 1.7e-25 120.9 319 40.1
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 2.2e-25 120.6 325 34.8
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 2.2e-25 120.6 312 34.6
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 4.2e-24 116.3 328 38.4
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 7.1e-24 115.5 319 37.0
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 9.3e-24 115.2 308 35.1
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 1.6e-23 114.4 324 38.0
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 1.6e-23 114.4 326 36.5
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 6.1e-23 112.5 332 34.9
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 1.0e-22 111.7 312 36.5
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 2.3e-22 110.5 325 34.5
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 2.3e-22 110.5 325 34.5
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 2.3e-22 110.5 325 34.5
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 2.3e-22 110.5 313 38.3
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 2.5e-21 107.1 320 33.1
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 9.7e-21 105.1 101 53.5
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 4.8e-20 102.8 326 38.7
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 1.3e-17 94.7 158 42.4
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 2.9e-17 93.6 67 71.6
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 2.9e-17 93.6 335 31.3
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 1.1e-16 91.7 97 58.8
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 1.9e-16 90.9 364 39.8
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 7.2e-16 89.0 308 31.2
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 1.2e-15 88.2 223 35.4
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 3.6e-15 86.7 282 31.9
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 4.6e-15 86.3 315 31.1
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 6.1e-15 85.9 93 51.6
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 1.8e-14 84.3 99 48.5
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 3.9e-14 83.2 99 44.4
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 5.1e-14 82.8 71 60.6
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 1.1e-13 81.6 93 49.5
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 1.5e-13 81.3 304 31.6
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 9.7e-13 78.6 93 49.5
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 1.3e-12 78.2 86 46.5
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 1.7e-12 77.8 89 46.1
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 2.2e-12 77.4 98 45.9
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 2.8e-12 77.0 71 62.0
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 4.8e-12 76.3 106 45.3
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 8.2e-12 75.5 68 55.9
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.1e-11 75.1 98 45.9
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 1.1e-11 75.1 258 31.0
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 1.1e-11 75.1 106 44.3
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 1.1e-11 75.1 87 42.5
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 9.1e-11 72.0 62 62.9
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 9.1e-11 72.0 109 45.0
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 9.1e-11 72.0 62 62.9
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 2.0e-10 70.9 312 30.8
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 2.0e-10 70.9 75 50.7
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 2.6e-10 70.5 90 44.4
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 3.4e-10 70.1 62 61.3
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 5.9e-10 69.3 310 30.6
CARHR023710 Cardamine hirsuta HOM05D005197 ORTHO05D006263 1.0e-09 68.6 60 58.3
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 1.0e-09 68.6 91 42.9
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 1.3e-09 68.2 90 44.4
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 6.5e-09 65.9 47 70.2
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 1.9e-08 64.3 77 45.5
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 2.5e-08 63.9 116 39.7
HPP92_022730 Vanilla planifolia HOM05D005197 ORTHO05D006263 2.5e-08 63.9 309 23.6
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 3.2e-08 63.5 112 39.3
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 3.2e-08 63.5 79 45.6
VMungo0464G0602 Vigna mungo HOM05D005197 ORTHO05D006263 7.2e-08 62.4 229 30.1
AL1G37050 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 2.7e-07 60.5 54 55.6
AL1G31860 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 3.6e-07 60.1 59 49.2
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 4.7e-07 59.7 150 34.7
SalBow2G3639 Salvia bowleyana HOM05D002402 ORTHO05D002633 1.0e-06 58.5 121 43.8
Os06g0710900 Oryza sativa ssp. japonica HOM05D005197 ORTHO05D006263 1.8e-06 57.8 114 35.1
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 1.8e-06 57.8 313 27.2
arahy.Tifrunner.gnm1.ann1.G7W534 Arachis hypogaea HOM05D005197 ORTHO05D006263 5.1e-06 56.2 71 42.3
arahy.Tifrunner.gnm1.ann1.JB60CZ Arachis hypogaea HOM05D005197 ORTHO05D006263 5.1e-06 56.2 71 42.3
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 5.1e-06 56.2 59 47.5
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 8.8e-06 55.5 68 54.4


User provided reference genes

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