Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.6e-78 296.2 165 100.0
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 4.9e-40 168.3 169 59.2
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 3.3e-20 102.4 148 43.9
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 7.4e-20 101.3 141 41.8
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 3.1e-18 95.9 163 49.1
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 6.9e-18 94.7 127 48.0
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 5.8e-17 91.7 143 43.4
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 1.3e-16 90.5 163 48.5
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.7e-16 90.1 140 44.3
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 2.9e-16 89.4 128 52.3
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 8.4e-16 87.8 143 44.8
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.1e-15 87.4 135 51.1
QL05p061901 Quercus lobata HOM05D005932 ORTHO05D006213 2.7e-14 82.8 182 42.9
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 4.6e-14 82.0 127 42.5
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 6.0e-14 81.6 133 42.9
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 7.9e-14 81.3 124 44.4
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.0e-13 80.9 130 42.3
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 1.3e-13 80.5 157 44.6
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 1.8e-13 80.1 135 40.0
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.8e-13 80.1 127 45.7
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 2.3e-13 79.7 127 40.9
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 2.3e-13 79.7 142 43.7
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 2.3e-13 79.7 130 44.6
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 6.7e-13 78.2 130 40.8
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 6.7e-13 78.2 129 46.5
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 8.7e-13 77.8 128 41.4
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 8.7e-13 77.8 130 41.5
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.5e-12 77.0 127 46.5
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.9e-12 76.6 127 46.5
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 3.3e-12 75.9 163 35.0
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 4.3e-12 75.5 132 43.2
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 4.3e-12 75.5 132 40.2
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 4.3e-12 75.5 130 38.5
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 7.4e-12 74.7 165 35.8
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 9.6e-12 74.3 142 36.6
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.3e-11 73.9 132 38.6
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 1.3e-11 73.9 134 39.6
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 1.6e-11 73.6 140 37.1
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.6e-11 73.6 127 42.5
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 1.6e-11 73.6 133 42.9
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 2.1e-11 73.2 115 45.2
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 2.1e-11 73.2 155 35.5
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 3.7e-11 72.4 142 37.3
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 4.8e-11 72.0 128 39.8
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 8.1e-11 71.2 133 36.8
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 1.4e-10 70.5 144 34.7
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 1.8e-10 70.1 129 37.2
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 2.4e-10 69.7 148 33.8
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 2.4e-10 69.7 135 41.5
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 3.1e-10 69.3 122 41.8
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 4.0e-10 68.9 155 36.8
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 5.3e-10 68.6 133 38.3
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 5.3e-10 68.6 129 36.4
Sopen02g019050 Solanum pennellii HOM05D005932 ORTHO05D006213 6.9e-10 68.2 137 34.3
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 1.2e-09 67.4 133 36.1
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 1.5e-09 67.0 127 37.8
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 1.5e-09 67.0 108 42.6
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 2.6e-09 66.2 131 39.7
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 5.8e-09 65.1 123 37.4
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 5.8e-09 65.1 129 36.4
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 7.6e-09 64.7 134 38.1
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 7.6e-09 64.7 134 38.1
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 7.6e-09 64.7 134 38.1
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 7.6e-09 64.7 158 31.6
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 7.6e-09 64.7 158 35.4
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.0e-08 64.3 117 39.3
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 1.7e-08 63.5 142 35.9
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.7e-08 63.5 120 42.5
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.7e-08 63.5 110 41.8
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 2.2e-08 63.2 147 41.5
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 2.9e-08 62.8 120 36.7
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 3.8e-08 62.4 126 37.3
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 3.8e-08 62.4 146 32.2
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 4.9e-08 62.0 120 45.0
PGSC0003DMG400021122 Solanum tuberosum HOM05D005932 ORTHO05D006213 4.9e-08 62.0 150 32.7
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 6.5e-08 61.6 136 40.4
TWI63G1224 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 6.5e-08 61.6 107 38.3
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 8.4e-08 61.2 124 41.9
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 1.1e-07 60.8 135 38.5
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 1.1e-07 60.8 121 34.7
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 1.4e-07 60.5 131 35.9
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 1.9e-07 60.1 131 36.6
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 2.5e-07 59.7 130 33.1
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 3.2e-07 59.3 148 35.1
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 3.2e-07 59.3 123 35.8
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 5.5e-07 58.5 110 36.4
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 5.5e-07 58.5 129 40.3
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 7.1e-07 58.2 132 36.4
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 1.2e-06 57.4 143 37.1
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 2.1e-06 56.6 125 35.2
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 2.1e-06 56.6 161 36.0
Solyc02g069910.2 Solanum lycopersicum HOM05D005932 ORTHO05D006213 2.7e-06 56.2 90 40.0
FAN25G3656 Fragaria x ananassa HOM05D005932 ORTHO05D006213 4.6e-06 55.5 104 44.2
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 4.6e-06 55.5 107 33.6
MELO3C002809.2 Cucumis melo HOM05D005932 ORTHO05D006213 6.0e-06 55.1 101 39.6
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 6.0e-06 55.1 134 32.8


User provided reference genes

Program Settings