Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.3e-57 225.3 114 100.0
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-47 192.6 103 95.1
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 5.2e-41 171.0 113 74.3
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.6e-40 168.7 113 77.0
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.7e-39 164.9 114 66.7
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.9e-38 162.5 116 66.4
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 4.1e-38 161.4 113 69.9
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 4.1e-38 161.4 116 67.2
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 5.4e-38 161.0 113 70.8
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.2e-37 159.8 117 69.2
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.6e-37 159.5 113 66.4
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.7e-37 158.7 119 68.1
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 2.7e-37 158.7 118 66.9
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.6e-37 157.9 113 65.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 7.8e-37 157.1 113 63.7
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.0e-36 156.8 115 67.8
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.7e-36 156.0 113 69.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 2.3e-36 155.6 115 70.4
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 3.9e-36 154.8 119 66.4
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.1e-36 154.5 113 65.5
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 6.6e-36 154.1 113 69.0
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.1e-35 153.3 118 64.4
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.5e-35 152.1 113 64.6
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 3.3e-35 151.8 113 66.4
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.3e-35 151.4 75 96.0
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 2.8e-34 148.7 113 67.3
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.8e-34 148.7 113 66.4
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.8e-34 148.7 113 65.5
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 8.1e-34 147.1 113 64.6
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 8.1e-34 147.1 113 64.6
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 8.1e-34 147.1 113 64.6
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.8e-33 146.0 113 63.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.8e-33 146.0 113 61.9
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 2.3e-33 145.6 116 62.9
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 2.3e-33 145.6 116 62.9
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.3e-33 145.6 113 64.6
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 3.1e-33 145.2 120 61.7
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 3.1e-33 145.2 113 61.9
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 5.2e-33 144.4 118 62.7
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 5.2e-33 144.4 113 61.1
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 5.2e-33 144.4 113 62.8
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 6.8e-33 144.1 113 64.6
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 6.8e-33 144.1 113 66.4
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 8.9e-33 143.7 113 60.2
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.5e-32 142.9 113 62.8
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.0e-32 142.5 114 64.0
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 2.6e-32 142.1 113 62.8
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.6e-32 142.1 113 62.8
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.6e-32 142.1 113 62.8
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.6e-32 142.1 114 66.7
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.6e-32 142.1 113 60.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.4e-32 141.7 113 61.9
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.8e-32 141.0 113 61.9
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 5.8e-32 141.0 114 64.9
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 5.8e-32 141.0 114 63.2
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 5.8e-32 141.0 117 62.4
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 7.6e-32 140.6 113 62.8
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 9.9e-32 140.2 113 62.8
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 9.9e-32 140.2 113 61.1
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.3e-31 139.8 113 61.1
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.7e-31 139.4 114 62.3
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.2e-31 139.0 120 61.7
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.2e-31 139.0 120 59.2
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.2e-31 139.0 113 61.1
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.2e-31 139.0 113 60.2
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.9e-31 138.7 113 62.8
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 3.8e-31 138.3 113 58.4
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 4.9e-31 137.9 120 58.3
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 8.4e-31 137.1 111 62.2
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.1e-30 136.7 114 62.3
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.1e-30 136.7 113 59.3
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.1e-30 136.7 115 61.7
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.4e-30 136.3 113 61.1
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 2.4e-30 135.6 113 61.1
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 5.4e-30 134.4 113 61.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 9.2e-30 133.7 113 56.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.2e-29 133.3 113 59.3
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.2e-29 133.3 113 59.3
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.2e-29 133.3 115 58.3
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.2e-29 133.3 115 58.3
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.2e-29 133.3 104 64.4
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.6e-29 132.9 120 58.3
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.7e-29 132.1 113 56.6
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 7.8e-29 130.6 113 58.4
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.0e-28 130.2 111 60.4
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.0e-28 130.2 125 54.4
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.0e-28 130.2 114 60.5
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.3e-28 129.8 113 57.5
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 2.3e-28 129.0 113 55.8
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 3.0e-28 128.6 111 58.6
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.9e-28 128.3 113 58.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.9e-27 125.9 113 57.5
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 3.3e-27 125.2 113 56.6
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 5.6e-27 124.4 114 59.6
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 7.3e-27 124.0 115 59.1
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 4.7e-26 121.3 113 56.6
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 2.4e-25 119.0 115 53.9
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 6.9e-25 117.5 65 95.4
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.2e-24 116.7 73 69.9
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.5e-24 116.3 123 52.0
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.6e-24 115.5 113 54.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 4.9e-23 111.3 118 48.3
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.1e-21 105.9 91 57.1
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.0e-20 103.6 115 51.3
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.7e-20 102.8 113 48.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.5e-19 99.8 117 43.6
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.4e-17 93.2 113 46.0
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.3e-15 86.7 82 52.4
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.1e-14 83.6 84 51.2
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 4.2e-14 81.6 70 54.3
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 2.7e-13 79.0 49 67.3
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 3.5e-13 78.6 113 41.6
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.0e-12 75.5 65 64.6
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 7.4e-11 70.9 65 64.6
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.3e-10 70.1 65 49.2
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 6.4e-07 57.8 61 52.5


User provided reference genes

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