Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 7.9e-222 773.5 391 100.0
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 4.0e-149 531.9 371 76.3
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.1e-146 523.9 394 72.3
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.4e-146 523.5 355 78.0
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.4e-146 522.7 344 78.8
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 9.5e-143 510.8 358 75.4
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 6.2e-142 508.1 354 77.4
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.1e-141 507.3 353 75.1
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.8e-141 506.5 353 75.9
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 8.9e-141 504.2 354 75.4
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 4.9e-139 498.4 394 69.0
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 6.4e-139 498.0 354 74.3
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 1.4e-138 496.9 354 75.1
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 4.1e-138 495.4 361 73.1
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 9.2e-138 494.2 354 74.3
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.1e-137 493.0 356 73.6
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 2.1e-137 493.0 352 74.4
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 7.8e-137 491.1 352 74.4
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 8.6e-136 487.6 343 77.6
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 8.6e-136 487.6 351 72.6
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.9e-135 486.5 354 73.4
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.2e-134 483.8 395 66.3
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 2.1e-134 483.0 352 73.3
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.8e-134 482.6 353 73.9
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 6.2e-134 481.5 353 73.7
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-133 480.7 351 74.1
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.4e-133 480.3 359 73.8
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.0e-133 478.8 353 73.4
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 8.9e-133 477.6 393 67.2
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.2e-132 477.2 383 68.4
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.9e-132 474.2 353 73.1
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 3.2e-130 469.2 352 70.5
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 2.7e-129 466.1 353 68.3
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 6.0e-129 464.9 353 70.3
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 7.8e-129 464.5 355 69.0
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 2.3e-128 463.0 355 68.7
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.0e-128 462.6 352 68.8
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 3.9e-128 462.2 352 70.2
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 8.7e-128 461.1 356 69.4
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 4.3e-127 458.8 386 67.1
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 7.3e-127 458.0 376 65.7
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.3e-126 457.2 352 68.8
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 2.8e-126 456.1 361 69.5
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 3.6e-126 455.7 355 68.7
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 5.3e-125 451.8 358 66.5
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 5.3e-125 451.8 354 68.6
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 5.3e-125 451.8 354 67.5
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.2e-124 450.7 354 68.6
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.2e-124 450.7 355 68.2
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.2e-124 450.7 361 66.2
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 2.0e-124 449.9 391 66.5
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.4e-124 449.1 361 65.9
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 9.9e-124 447.6 391 66.2
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.7e-123 446.8 355 67.9
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 3.8e-123 445.7 353 67.7
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 4.9e-123 445.3 357 67.2
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.4e-123 444.9 351 68.7
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 8.4e-123 444.5 351 69.2
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-122 444.1 353 68.0
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 1.9e-122 443.4 369 64.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 3.2e-122 442.6 371 66.8
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.2e-122 442.6 344 68.9
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.2e-121 440.7 353 68.3
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 3.0e-120 436.0 356 67.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.1e-119 434.1 353 67.1
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.9e-119 433.3 356 65.7
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 5.6e-119 431.8 359 65.2
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.6e-118 430.3 369 62.6
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.6e-118 430.3 392 62.8
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.6e-118 429.1 352 65.1
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 3.6e-118 429.1 282 80.9
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 6.2e-118 428.3 352 66.5
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.8e-117 426.8 355 66.5
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 2.4e-117 426.4 422 59.2
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 3.1e-117 426.0 359 68.0
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 3.1e-117 426.0 358 67.6
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.7e-115 420.2 353 65.2
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 2.9e-115 419.5 354 64.1
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 3.8e-115 419.1 383 60.8
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 6.0e-113 411.8 355 62.5
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.8e-112 410.2 389 59.4
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 2.3e-112 409.8 362 65.2
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 6.7e-112 408.3 356 63.2
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 1.4e-109 400.6 362 63.8
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 6.9e-109 398.3 351 63.2
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 1.2e-108 397.5 352 63.4
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-107 394.0 355 61.4
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.7e-107 393.7 352 61.9
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.4e-106 390.6 356 61.5
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.4e-106 390.6 356 62.4
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 3.2e-106 389.4 386 59.6
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.2e-105 387.5 354 62.1
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.6e-105 387.1 356 62.1
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 2.1e-105 386.7 360 62.2
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 5.1e-104 382.1 356 61.2
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 9.6e-103 377.9 355 61.1
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.9e-99 366.3 357 60.2
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.1e-98 364.4 282 72.0
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 2.5e-98 363.2 359 61.0
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 4.2e-98 362.5 354 59.0
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 9.3e-98 361.3 346 59.2
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.2e-97 360.9 371 59.6
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 2.7e-97 359.8 275 72.0
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.7e-97 359.8 352 56.8
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.3e-96 357.5 358 59.8
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 3.9e-96 355.9 360 60.6
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.5e-95 353.2 355 58.0
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.2e-94 350.1 355 58.0
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 3.1e-93 346.3 359 59.3
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 3.4e-92 342.8 354 59.0
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 1.3e-91 340.9 359 56.3
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 8.5e-91 338.2 494 47.8
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 4.2e-90 335.9 347 58.8
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 7.2e-90 335.1 288 63.5
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 1.0e-88 331.3 359 57.4
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.8e-88 330.5 359 57.7
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 4.3e-87 325.9 359 56.8
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 9.7e-87 324.7 285 62.8
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 3.7e-86 322.8 366 53.6
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 5.3e-85 318.9 360 55.8
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 2.6e-84 316.6 357 54.9
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 2.6e-84 316.6 357 54.9
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.2e-83 313.5 359 54.9
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 7.9e-81 305.1 459 46.0
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.0e-79 300.4 305 56.7
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.7e-73 280.0 390 45.1
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 4.4e-71 272.7 382 45.8
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.8e-69 267.3 167 82.0
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 4.5e-68 262.7 383 44.6
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.3e-64 250.4 165 81.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 3.0e-64 250.0 393 43.5
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.2e-58 229.6 283 53.0
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.2e-58 229.6 283 53.0
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.2e-57 228.0 227 59.0
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 6.8e-56 222.2 694 30.4
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 1.2e-55 221.5 312 49.4
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 4.5e-52 209.5 98 100.0
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.0e-48 198.4 365 40.3
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.0e-48 196.4 99 93.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.0e-48 196.4 99 93.9
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 2.9e-46 190.3 184 60.9
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 4.1e-45 186.4 323 42.7
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 2.7e-44 183.7 211 56.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 7.8e-44 182.2 131 67.2
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.2e-41 172.6 228 48.7
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 1.0e-40 171.8 93 88.2
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 4.1e-29 133.3 186 46.8
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 1.7e-27 127.9 71 80.3
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.4e-23 113.6 361 32.1
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.4e-23 113.6 70 78.6
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 5.8e-23 112.8 94 55.3
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 9.9e-23 112.1 165 46.1
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.7e-22 111.3 116 44.8
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.9e-22 110.5 65 81.5
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.2e-17 95.1 79 59.5
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.8e-16 91.3 139 43.9
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 2.9e-14 84.0 100 51.0
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 1.3e-11 75.1 63 60.3
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 2.4e-08 64.3 74 48.6
Sopen12g027930 Solanum pennellii HOM05D004432 ORTHO05D051027 5.3e-08 63.2 63 57.1
Solyc12g077430.1 Solanum lycopersicum HOM05D004432 ORTHO05D051027 3.4e-07 60.5 63 57.1
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 3.8e-06 57.0 63 46.0


User provided reference genes

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