Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G101100 Carya illinoinensis HOM05D000018 ORTHO05D126792 4.9e-23 110.2 51 100.0
CiPaw.05G031800 Carya illinoinensis HOM05D000018 ORTHO05D001333 1.1e-09 65.9 38 76.3
Potri.017G048700 Populus trichocarpa HOM05D000018 ORTHO05D001333 9.0e-09 62.8 38 68.4
Potri.017G048900 Populus trichocarpa HOM05D000018 ORTHO05D001333 9.0e-09 62.8 38 68.4
Manes.07G037600 Manihot esculenta HOM05D000018 ORTHO05D001333 1.5e-08 62.0 38 65.8
Manes.10G103200 Manihot esculenta HOM05D000018 ORTHO05D001333 1.5e-08 62.0 34 79.4
PGR042G0215 Punica granatum HOM05D000018 ORTHO05D001333 1.5e-08 62.0 38 71.1
Cfa005691 Carpinus fangiana HOM05D000018 ORTHO05D001333 2.0e-08 61.6 38 73.7
MD10G1053500 Malus domestica HOM05D000018 ORTHO05D001333 2.0e-08 61.6 38 73.7
Prupe.8G066900 Prunus persica HOM05D000018 ORTHO05D001333 2.6e-08 61.2 38 71.1
Sabra17G0034400 Salix brachista HOM05D000018 ORTHO05D001333 3.4e-08 60.8 38 71.1
Sabra17G0035100 Salix brachista HOM05D000018 ORTHO05D001333 3.4e-08 60.8 38 71.1
Sabra17G0035700 Salix brachista HOM05D000018 ORTHO05D001333 3.4e-08 60.8 38 71.1
QL11p023272 Quercus lobata HOM05D000018 ORTHO05D001333 4.4e-08 60.5 38 65.8
Sabra17G0033400 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0033600 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0034300 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0034800 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0036100 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0036300 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0037800 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0041200 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0041400 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Sabra17G0041800 Salix brachista HOM05D000018 ORTHO05D001333 4.4e-08 60.5 34 76.5
Haze_10559 Corylus avellana HOM05D000018 ORTHO05D001333 7.6e-08 59.7 38 71.1
CANSAT11G2670 Cannabis sativa HOM05D000018 ORTHO05D001333 9.9e-08 59.3 38 68.4
RcHm_v2.0_Chr6g0271361 Rosa chinensis HOM05D000018 ORTHO05D001333 9.9e-08 59.3 38 68.4
Sabra17G0035400 Salix brachista HOM05D000018 ORTHO05D001333 9.9e-08 59.3 38 68.4
Psat7g100560 Pisum sativum HOM05D000018 ORTHO05D001333 1.3e-07 58.9 34 73.5
Ca_18370_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001333 1.7e-07 58.5 47 59.6
Sabra17G0034700 Salix brachista HOM05D000018 ORTHO05D001333 1.7e-07 58.5 38 68.4
Migut.B00575 Erythranthe guttata HOM05D000018 ORTHO05D001333 2.9e-07 57.8 38 63.2
Potri.017G049000 Populus trichocarpa HOM05D000018 ORTHO05D001333 2.9e-07 57.8 38 65.8
Sopen01g048110 Solanum pennellii HOM05D000018 ORTHO05D001333 2.9e-07 57.8 38 63.2
PGSC0003DMG400033567 Solanum tuberosum HOM05D000018 ORTHO05D001333 2.9e-07 57.8 38 63.2
CANSAT11G0053 Cannabis sativa HOM05D000018 ORTHO05D001333 3.8e-07 57.4 38 65.8
Nn5g29966 Nelumbo nucifera HOM05D000018 ORTHO05D001333 3.8e-07 57.4 38 65.8
PGR142G2408 Punica granatum HOM05D000018 ORTHO05D001333 3.8e-07 57.4 38 55.3
GSVIVG01015703001 Vitis vinifera HOM05D000018 ORTHO05D001333 3.8e-07 57.4 38 65.8
Medtr4g093840 Medicago truncatula HOM05D000018 ORTHO05D001333 4.9e-07 57.0 34 70.6
Solyc01g105660.4 Solanum lycopersicum HOM05D000018 ORTHO05D001333 4.9e-07 57.0 43 58.1
TPR.G2859 Trifolium pratense HOM05D000018 ORTHO05D001333 4.9e-07 57.0 34 70.6
CiPaw.06G156400 Carya illinoinensis HOM05D000018 ORTHO05D001333 6.4e-07 56.6 38 63.2
Gohir.A13G051600 Gossypium hirsutum HOM05D000018 ORTHO05D001333 6.4e-07 56.6 38 65.8
Gohir.A13G069400 Gossypium hirsutum HOM05D000018 ORTHO05D001333 6.4e-07 56.6 38 65.8
Gorai.013G055900 Gossypium raimondii HOM05D000018 ORTHO05D001333 6.4e-07 56.6 38 65.8
Lj4g0013600 Lotus japonicus HOM05D000018 ORTHO05D001333 6.4e-07 56.6 47 57.4
Nitab4.5_0001264g0170 Nicotiana tabacum HOM05D000018 ORTHO05D001333 6.4e-07 56.6 38 63.2
CAN.G523.33 Capsicum annuum HOM05D000018 ORTHO05D001333 8.4e-07 56.2 38 63.2
CiPaw.10G123300 Carya illinoinensis HOM05D000018 ORTHO05D001333 8.4e-07 56.2 38 65.8
PGR042G2628 Punica granatum HOM05D000018 ORTHO05D001333 8.4e-07 56.2 38 63.2
CiPaw.05G031900 Carya illinoinensis HOM05D000018 ORTHO05D001333 1.1e-06 55.8 34 70.6
ECA234G4225 Erigeron canadensis HOM05D003403 ORTHO05D003889 1.1e-06 55.8 34 64.7
Gohir.D13G050000 Gossypium hirsutum HOM05D000018 ORTHO05D001333 1.1e-06 55.8 38 63.2
Nitab4.5_0006625g0020 Nicotiana tabacum HOM05D000018 ORTHO05D001333 1.1e-06 55.8 38 63.2
Peaxi162Scf00299g00866 Petunia axillaris HOM05D000018 ORTHO05D001333 1.1e-06 55.8 38 63.2
Nn1g05479 Nelumbo nucifera HOM05D000018 ORTHO05D001333 1.4e-06 55.5 38 63.2
QL11p023410 Quercus lobata HOM05D000018 ORTHO05D001333 1.4e-06 55.5 38 60.5
Thecc.02G132900 Theobroma cacao HOM05D000018 ORTHO05D001333 1.4e-06 55.5 38 63.2
Gohir.D13G052700 Gossypium hirsutum HOM05D000018 ORTHO05D001333 1.9e-06 55.1 38 63.2
HanXRQChr06g0169621 Helianthus annuus HOM05D000018 ORTHO05D001333 1.9e-06 55.1 34 64.7
QL11p023489 Quercus lobata HOM05D000018 ORTHO05D001333 1.9e-06 55.1 38 60.5
SalBow8G5280 Salvia bowleyana HOM05D000018 ORTHO05D001333 1.9e-06 55.1 34 64.7
TAR376G1052 Trochodendron aralioides HOM05D000018 ORTHO05D001333 1.9e-06 55.1 38 65.8
TAR376G1091 Trochodendron aralioides HOM05D000018 ORTHO05D022879 1.9e-06 55.1 38 65.8
MSTRG.16605 Avicennia marina HOM05D000018 ORTHO05D001333 2.4e-06 54.7 38 60.5
CiPaw.11G090100 Carya illinoinensis HOM05D000018 ORTHO05D001333 2.4e-06 54.7 34 64.7
Glyma.08G070000 Glycine max HOM05D000018 ORTHO05D001333 2.4e-06 54.7 34 64.7
HanXRQChr10g0289951 Helianthus annuus HOM05D000018 ORTHO05D001333 2.4e-06 54.7 34 64.7
MBI06_g18770_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D001333 2.4e-06 54.7 38 60.5
CiPaw.06G156500 Carya illinoinensis HOM05D000018 ORTHO05D001333 3.2e-06 54.3 38 60.5
Ciclev10005336m.g Citrus clementina HOM05D000018 ORTHO05D001333 3.2e-06 54.3 38 63.2
Glyma.07G180700 Glycine max HOM05D000018 ORTHO05D001333 3.2e-06 54.3 34 64.7
Thecc.02G132700 Theobroma cacao HOM05D000018 ORTHO05D001333 3.2e-06 54.3 38 63.2
VMungo0251G3108 Vigna mungo HOM05D000018 ORTHO05D001333 3.2e-06 54.3 34 64.7
CSS0031546 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D001333 4.2e-06 53.9 38 60.5
Cc02_g21100 Coffea canephora HOM05D000018 ORTHO05D001333 4.2e-06 53.9 38 57.9
COL.COLO4_32348 Corchorus olitorius HOM05D000018 ORTHO05D001333 5.4e-06 53.5 38 57.9
Haze_10560 Corylus avellana HOM05D000018 ORTHO05D001333 5.4e-06 53.5 34 67.6
Eucgr.G00955 Eucalyptus grandis HOM05D000018 ORTHO05D001333 5.4e-06 53.5 38 60.5
QL11p023441 Quercus lobata HOM05D000018 ORTHO05D001333 5.4e-06 53.5 38 57.9
arahy.Tifrunner.gnm1.ann1.E4YT9U Arachis hypogaea HOM05D000018 ORTHO05D001333 7.1e-06 53.1 47 55.3
COL.COLO4_32338 Corchorus olitorius HOM05D000018 ORTHO05D001333 7.1e-06 53.1 38 55.3
COL.COLO4_32342 Corchorus olitorius HOM05D000018 ORTHO05D001333 7.1e-06 53.1 38 55.3
Phvul.002G211500 Phaseolus vulgaris HOM05D000018 ORTHO05D001333 7.1e-06 53.1 34 61.8
Actinidia00288 Actinidia chinensis HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 57.9
arahy.Tifrunner.gnm1.ann1.CP8I5J Arachis hypogaea HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 60.5
arahy.Tifrunner.gnm1.ann1.Z64U2Q Arachis hypogaea HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 60.5
CSS0032422 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 57.9
Cfa005688 Carpinus fangiana HOM05D000018 ORTHO05D001333 9.3e-06 52.8 34 67.6
Haze_10561 Corylus avellana HOM05D000018 ORTHO05D001333 9.3e-06 52.8 34 67.6
Peaxi162Scf00045g01928 Petunia axillaris HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 55.3
Peaxi162Scf00045g02026 Petunia axillaris HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 55.3
Solyc08g006770.3 Solanum lycopersicum HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 55.3
Sopen08g002720 Solanum pennellii HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 55.3
PGSC0003DMG400026276 Solanum tuberosum HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 55.3
PGSC0003DMG400026277 Solanum tuberosum HOM05D000018 ORTHO05D001333 9.3e-06 52.8 38 55.3


User provided reference genes

Program Settings