Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.4e-196 689.5 354 100.0
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 3.9e-135 485.3 356 72.5
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 8.1e-133 477.6 357 70.3
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 7.1e-129 464.5 362 68.5
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 4.8e-125 451.8 359 68.2
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 5.8e-123 444.9 359 66.0
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 1.4e-121 440.3 362 65.5
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.2e-120 437.2 357 67.2
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 3.0e-119 432.6 347 66.0
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 1.5e-118 430.3 357 63.9
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 4.0e-116 422.2 357 63.6
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 5.8e-115 418.3 357 63.0
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 3.8e-114 415.6 348 63.8
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 3.8e-114 415.6 357 59.4
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 8.4e-114 414.5 358 62.3
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 4.2e-113 412.1 357 61.1
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.1e-112 409.8 359 61.3
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 2.1e-112 409.8 357 62.7
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 6.0e-112 408.3 357 60.2
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 7.9e-112 407.9 360 60.0
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.3e-111 407.1 357 61.3
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 6.7e-111 404.8 357 59.7
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.5e-110 403.7 347 59.7
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.5e-110 402.9 358 60.9
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.5e-110 402.9 358 60.9
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 3.3e-110 402.5 358 62.0
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 7.4e-110 401.4 347 59.1
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.3e-109 400.6 349 61.9
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.6e-109 400.2 360 61.1
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 8.2e-109 397.9 363 60.6
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 4.0e-108 395.6 449 51.7
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 9.0e-108 394.4 357 60.2
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 7.6e-107 391.3 362 55.8
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.7e-106 390.2 362 55.8
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.2e-106 389.8 352 59.7
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 3.8e-106 389.0 349 58.5
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.8e-106 389.0 243 83.5
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.1e-105 387.5 349 61.9
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.1e-105 387.5 399 55.6
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.4e-105 387.1 357 60.2
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 4.2e-105 385.6 349 59.6
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 4.2e-105 385.6 352 59.1
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 1.2e-104 384.0 358 57.8
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 2.7e-104 382.9 351 59.0
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 4.6e-104 382.1 352 60.2
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 2.3e-103 379.8 301 67.1
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 1.5e-102 377.1 357 56.0
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.9e-102 376.7 350 57.4
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 5.7e-102 375.2 356 58.1
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 4.8e-101 372.1 312 62.2
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.1e-100 370.9 336 59.2
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 5.3e-100 368.6 351 57.8
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.2e-99 367.5 357 54.1
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 7.6e-99 364.8 338 55.9
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.5e-97 359.8 351 53.8
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.6e-96 355.9 392 50.8
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 3.6e-96 355.9 408 52.0
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.8e-95 353.6 334 57.5
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 8.8e-95 351.3 291 64.3
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 1.7e-93 347.1 356 52.8
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 3.7e-93 345.9 281 64.4
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 3.7e-93 345.9 340 54.4
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 8.2e-93 344.7 356 52.2
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.4e-92 343.2 357 55.5
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 4.1e-92 342.4 355 55.5
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 5.9e-91 338.6 330 58.2
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 7.7e-91 338.2 352 53.7
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 2.2e-90 336.7 324 54.9
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.1e-89 334.3 345 52.5
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.5e-89 333.2 353 52.7
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 2.7e-88 329.7 354 50.8
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 5.1e-87 325.5 296 57.1
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 8.8e-87 324.7 356 48.9
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 2.0e-86 323.6 352 52.0
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-86 323.6 421 47.7
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-86 323.6 421 47.7
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 3.3e-86 322.8 347 52.2
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 7.4e-86 321.6 358 49.2
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.7e-85 320.5 425 48.2
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 3.7e-85 319.3 307 56.4
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 1.4e-84 317.4 356 48.0
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 5.3e-84 315.5 348 51.1
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 7.0e-84 315.1 359 47.1
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 7.0e-84 315.1 347 48.4
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 1.2e-83 314.3 248 65.7
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 4.5e-83 312.4 363 47.9
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 5.9e-83 312.0 350 48.0
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.9e-82 309.7 347 51.6
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 5.0e-82 308.9 351 48.1
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.4e-81 307.4 347 47.8
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.2e-81 305.8 349 50.7
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 9.4e-81 304.7 355 49.3
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 1.2e-80 304.3 355 49.9
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 3.6e-80 302.8 357 46.8
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 8.0e-80 301.6 353 46.5
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.8e-79 300.4 351 46.7
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 1.1e-78 297.7 359 46.0
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 2.0e-78 297.0 359 46.0
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.3e-78 296.2 296 56.8
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 4.4e-78 295.8 357 49.9
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 9.7e-78 294.7 359 44.8
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.3e-77 294.3 343 47.2
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.3e-77 294.3 358 45.0
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 2.8e-77 293.1 287 57.5
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 8.2e-77 291.6 353 45.3
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 8.2e-77 291.6 353 45.3
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.1e-76 291.2 266 60.2
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 4.1e-76 289.3 353 45.0
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.5e-73 280.8 347 45.0
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 4.2e-73 279.3 354 46.6
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 2.1e-72 276.9 292 49.7
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.6e-72 276.2 347 48.4
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 5.2e-71 272.3 327 46.8
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 7.5e-70 268.5 360 42.8
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 8.2e-69 265.0 381 40.9
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 1.4e-68 264.2 268 56.7
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 3.1e-68 263.1 357 48.2
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 5.3e-68 262.3 351 42.7
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.5e-67 259.2 360 46.7
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.3e-66 257.7 302 44.0
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.9e-66 256.5 356 41.3
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.0e-66 255.8 316 50.6
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 6.5e-66 255.4 271 53.9
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 8.5e-66 255.0 256 57.0
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 5.5e-65 252.3 296 48.3
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.2e-64 251.1 275 49.1
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 1.8e-63 247.3 308 44.2
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 3.0e-63 246.5 391 38.6
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 5.2e-63 245.7 349 44.1
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.6e-62 243.4 344 41.0
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 3.7e-61 239.6 266 50.4
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.1e-60 236.5 201 57.7
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.4e-60 235.7 343 43.1
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.3e-58 231.1 337 40.4
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.7e-58 230.7 305 42.0
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 9.8e-54 214.9 187 62.6
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 9.8e-54 214.9 356 42.7
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 7.8e-51 205.3 160 65.0
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 2.3e-50 203.8 180 61.1
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 9.5e-49 198.4 426 36.2
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 3.6e-48 196.4 259 45.9
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 8.9e-47 191.8 171 62.6
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 3.5e-43 179.9 136 66.2
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 2.5e-41 173.7 349 35.8
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.2e-40 171.4 173 53.8
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 1.6e-40 171.0 125 70.4
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 4.7e-40 169.5 137 62.8
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 6.8e-39 165.6 357 36.1
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 4.9e-37 159.5 358 36.3
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 5.1e-34 149.4 192 46.9
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 4.0e-31 139.8 158 51.9
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 8.9e-31 138.7 157 52.2
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 9.9e-30 135.2 110 60.9
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.2e-29 134.0 110 67.3
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 2.1e-27 127.5 240 35.8
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.6e-25 119.4 297 35.0
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.6e-24 116.7 110 63.6
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 1.1e-23 115.2 92 64.1
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.4e-23 114.8 106 54.7
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.8e-23 112.5 77 67.5
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.5e-22 111.3 118 48.3
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-20 105.1 72 75.0
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 1.6e-16 91.3 87 56.3
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 4.7e-16 89.7 119 42.0
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.2e-13 80.9 71 66.2
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 3.5e-11 73.6 43 74.4
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 5.1e-10 69.7 84 51.2
Pp3c1_42710 Physcomitrium patens HOM05D001248 ORTHO05D001183 6.9e-07 59.3 301 25.2
Pp3c2_8490 Physcomitrium patens HOM05D001248 ORTHO05D001183 6.9e-07 59.3 301 27.9
Sed0009914 Sechium edule HOM05D001248 ORTHO05D001183 9.0e-07 58.9 292 24.7
Eucgr.D01307 Eucalyptus grandis HOM05D001248 ORTHO05D001183 3.4e-06 57.0 290 25.5
CBR_g20333 Chara braunii HOM05D001248 ORTHO05D001183 4.5e-06 56.6 293 24.9
Haze_06777 Corylus avellana HOM05D001248 ORTHO05D001183 4.5e-06 56.6 295 24.1
Hma1.2p1_1142F.1_g261040 Hydrangea macrophylla HOM05D001248 ORTHO05D001183 4.5e-06 56.6 290 24.8
BraA01t01256Z Brassica rapa HOM05D001248 ORTHO05D001183 9.9e-06 55.5 302 24.8
Cfa005590 Carpinus fangiana HOM05D001248 ORTHO05D001183 9.9e-06 55.5 295 25.4
Duzib192G0336 Durio zibethinus HOM05D001248 ORTHO05D001183 9.9e-06 55.5 290 24.5


User provided reference genes

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