Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G090900 Carya illinoinensis HOM05D001016 ORTHO05D028673 3.6e-36 154.5 82 100.0
CiPaw.09G122500 Carya illinoinensis HOM05D001016 ORTHO05D004071 1.4e-16 89.4 69 73.9
Cfa000933 Carpinus fangiana HOM05D001016 ORTHO05D004071 1.8e-14 82.4 69 71.0
Haze_05616 Corylus avellana HOM05D001016 ORTHO05D004071 1.8e-14 82.4 69 69.6
Ciclev10015440m.g Citrus clementina HOM05D001016 ORTHO05D004071 7.4e-13 77.0 69 66.7
Dinv30762 Davidia involucrata HOM05D001016 ORTHO05D028673 2.1e-12 75.5 74 59.5
Atru.chr10.1195 Acer truncatum HOM05D001016 ORTHO05D004071 6.2e-12 73.9 69 62.3
TAR626G0024 Trochodendron aralioides HOM05D001016 ORTHO05D004071 8.2e-12 73.6 71 59.2
CSS0003349 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 5.3e-11 70.9 76 53.9
vmacro03332 Vaccinium macrocarpon HOM05D001016 ORTHO05D004071 5.3e-11 70.9 76 51.3
Potri.017G076500 Populus trichocarpa HOM05D001016 ORTHO05D004071 1.0e-09 66.6 75 64.0
TAR624G0005 Trochodendron aralioides HOM05D001016 ORTHO05D004071 1.0e-09 66.6 74 52.7
FvH4_3g05390 Fragaria vesca HOM05D001016 ORTHO05D004071 1.3e-09 66.2 69 60.9
FAN11G0472 Fragaria x ananassa HOM05D001016 ORTHO05D004071 1.3e-09 66.2 69 60.9
FAN25G0750 Fragaria x ananassa HOM05D001016 ORTHO05D004071 1.3e-09 66.2 69 60.9
Manes.17G071300 Manihot esculenta HOM05D001016 ORTHO05D004071 2.9e-09 65.1 71 57.7
Eucgr.E01909 Eucalyptus grandis HOM05D001016 ORTHO05D004071 3.8e-09 64.7 68 58.8
PGR031G1194 Punica granatum HOM05D001016 ORTHO05D004071 3.8e-09 64.7 69 58.0
Manes.15G122600 Manihot esculenta HOM05D001016 ORTHO05D004071 5.0e-09 64.3 71 57.7
Actinidia39581 Actinidia chinensis HOM05D001016 ORTHO05D004071 8.4e-09 63.5 82 47.6
CSS0036432 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 8.4e-09 63.5 77 53.2
MD05G1282600 Malus domestica HOM05D001016 ORTHO05D004071 8.4e-09 63.5 69 59.4
FAN21G2759 Fragaria x ananassa HOM05D001016 ORTHO05D004071 1.1e-08 63.2 69 58.0
PGSC0003DMG400007488 Solanum tuberosum HOM05D001016 ORTHO05D004071 1.1e-08 63.2 70 55.7
Peaxi162Scf00317g00114 Petunia axillaris HOM05D001016 ORTHO05D004071 1.4e-08 62.8 70 55.7
Sopen08g007290 Solanum pennellii HOM05D001016 ORTHO05D004071 1.4e-08 62.8 70 54.3
Actinidia07704 Actinidia chinensis HOM05D001016 ORTHO05D004071 1.9e-08 62.4 82 46.3
Solyc08g016750.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 1.9e-08 62.4 70 54.3
QL05p057475 Quercus lobata HOM05D001016 ORTHO05D004071 4.2e-08 61.2 71 60.6
Solyc04g008590.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 4.2e-08 61.2 70 55.7
DCAR_003906 Daucus carota HOM05D001016 ORTHO05D004071 7.1e-08 60.5 77 51.9
Lsat_1_v5_gn_7_28120 Lactuca sativa HOM05D001016 ORTHO05D004071 7.1e-08 60.5 70 52.9
Rhsim13G0114600 Rhododendron simsii HOM05D001016 ORTHO05D004071 7.1e-08 60.5 76 46.1
FAN16G1622 Fragaria x ananassa HOM05D001016 ORTHO05D004071 9.3e-08 60.1 69 56.5
CANSAT35G1281 Cannabis sativa HOM05D001016 ORTHO05D004071 1.2e-07 59.7 72 55.6
COL.COLO4_31054 Corchorus olitorius HOM05D001016 ORTHO05D004071 1.6e-07 59.3 72 56.9
DCAR_007886 Daucus carota HOM05D001016 ORTHO05D028673 1.6e-07 59.3 77 48.1
Lsat_1_v5_gn_4_29381 Lactuca sativa HOM05D001016 ORTHO05D004071 1.6e-07 59.3 79 46.8
Nitab4.5_0011303g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 1.6e-07 59.3 72 55.6
Duzib192G0341 Durio zibethinus HOM05D001016 ORTHO05D004071 2.7e-07 58.5 72 54.2
PGSC0003DMG400031370 Solanum tuberosum HOM05D001016 ORTHO05D004071 2.7e-07 58.5 73 54.8
Thecc.06G148900 Theobroma cacao HOM05D001016 ORTHO05D004071 3.5e-07 58.2 72 55.6
Duzib235G1429 Durio zibethinus HOM05D001016 ORTHO05D004071 4.6e-07 57.8 79 51.9
RcHm_v2.0_Chr5g0014341 Rosa chinensis HOM05D001016 ORTHO05D004071 4.6e-07 57.8 74 55.4
Lj6g0024917 Lotus japonicus HOM05D001016 ORTHO05D004071 6.1e-07 57.4 69 55.1
Ca_18175_v3 Cicer arietinum L. HOM05D001016 ORTHO05D004071 7.9e-07 57.0 71 56.3
Gohir.A06G138500 Gossypium hirsutum HOM05D001016 ORTHO05D004071 7.9e-07 57.0 72 54.2
Peaxi162Scf00394g00118 Petunia axillaris HOM05D001016 ORTHO05D004071 1.0e-06 56.6 69 52.2
Gorai.009G154500 Gossypium raimondii HOM05D001016 ORTHO05D004071 1.3e-06 56.2 72 55.6
Nn3g20468 Nelumbo nucifera HOM05D001016 ORTHO05D028673 1.3e-06 56.2 70 52.9
Nitab4.5_0000348g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 1.3e-06 56.2 72 52.8
Cpa.g.sc246.2 Carica papaya HOM05D001016 ORTHO05D004071 1.8e-06 55.8 69 53.6
Nitab4.5_0003681g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 1.8e-06 55.8 72 52.8
Rhsim13G0114500 Rhododendron simsii HOM05D001016 ORTHO05D004071 1.8e-06 55.8 76 46.1
Sopen04g003750 Solanum pennellii HOM05D001016 ORTHO05D004071 1.8e-06 55.8 73 53.4
Sabra04G0087800 Salix brachista HOM05D001016 ORTHO05D004071 2.3e-06 55.5 77 55.8
HanXRQChr16g0525591 Helianthus annuus HOM05D001016 ORTHO05D004071 3.0e-06 55.1 76 48.7
TPR.G9587 Trifolium pratense HOM05D001016 ORTHO05D004071 3.0e-06 55.1 71 53.5
Gohir.A05G147900 Gossypium hirsutum HOM05D001016 ORTHO05D004071 3.9e-06 54.7 71 54.9
Gohir.D06G143200 Gossypium hirsutum HOM05D001016 ORTHO05D004071 3.9e-06 54.7 72 52.8
Gorai.010G167000 Gossypium raimondii HOM05D001016 ORTHO05D004071 5.1e-06 54.3 72 52.8
CAN.G68.10 Capsicum annuum HOM05D001016 ORTHO05D004071 6.7e-06 53.9 70 47.1
HanXRQChr17g0564651 Helianthus annuus HOM05D001016 ORTHO05D004071 6.7e-06 53.9 69 50.7


User provided reference genes

Program Settings