Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 3259.9 1713 100.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2865.1 1713 86.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2650.5 1723 79.0
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2601.2 1721 77.5
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2596.2 1714 76.6
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2593.5 1722 77.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2578.9 1717 76.8
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2568.9 1721 76.8
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2560.8 1719 75.9
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2554.6 1725 75.5
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2542.3 1722 75.1
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2538.8 1718 76.2
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2530.7 1723 76.0
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2530.4 1722 74.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2524.2 1725 75.5
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2520.7 1722 74.7
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2514.2 1718 74.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2511.9 1722 75.6
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2503.4 1722 74.2
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2494.9 1736 74.5
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2493.8 1722 74.2
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2491.1 1701 74.7
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2489.9 1766 76.0
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2488.4 1744 74.1
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2471.0 1726 74.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2467.6 1722 73.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2464.5 1731 75.1
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2454.1 1730 73.1
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2450.6 1722 73.6
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2443.3 1722 74.3
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2433.3 1725 72.9
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2428.3 1726 72.5
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2420.6 1725 72.6
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2419.0 1718 73.3
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2414.0 1779 70.9
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2396.7 1707 72.6
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2394.0 1746 70.7
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2374.0 1690 72.8
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2370.1 1720 71.3
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2355.1 1690 72.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2352.4 1704 69.9
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2340.8 1739 69.0
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2331.2 1724 69.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2329.7 1720 69.7
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2323.1 1716 68.5
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2318.9 1669 71.8
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2313.1 1726 68.4
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2312.7 1726 68.9
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2312.0 1724 68.3
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2309.3 1716 68.1
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2295.8 1736 68.9
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2292.3 1727 68.5
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2291.5 1866 65.9
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2281.5 1705 69.8
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2274.6 1736 67.4
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2264.6 1704 68.6
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2262.3 1702 69.0
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2260.0 1771 67.9
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2253.8 1703 68.5
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2246.5 1723 68.3
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2244.2 1762 65.9
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2234.9 1723 68.0
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2233.4 1737 67.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2229.9 1728 67.1
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1725 67.2
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2216.4 1720 67.6
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2215.7 1414 77.6
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2215.3 1733 67.0
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2214.9 1724 67.2
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2209.9 1708 66.9
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2202.9 1701 66.3
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2201.4 1720 67.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2186.0 1685 67.4
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2182.9 1749 66.5
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2180.2 1722 66.2
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2171.0 1762 64.8
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2152.1 2141 57.3
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2143.6 1761 64.1
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 2120.9 1721 65.3
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2120.5 1621 67.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2119.4 1743 64.3
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2059.3 1296 76.3
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2055.8 1292 77.0
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2050.0 1720 61.8
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2047.3 1693 63.1
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1993.4 1730 66.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1989.2 1159 82.1
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1988.0 1693 62.6
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1948.7 1771 59.0
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1928.3 1689 60.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1926.0 1457 68.0
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1896.7 1830 57.7
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1789.2 1450 65.5
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1716.4 1620 55.8
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1700.6 1558 55.3
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1691.4 1558 56.8
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1677.9 1746 52.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1671.8 1045 77.5
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1624.8 1615 53.3
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1560.4 936 80.2
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1528.5 1144 72.0
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1504.6 1084 66.0
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1450.3 1099 71.3
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1396.3 1177 65.9
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1375.5 1372 55.6
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1215.3 910 66.8
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1201.4 939 69.9
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.8e-303 1046.2 741 68.8
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.9e-300 1036.2 616 81.5
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.8e-270 937.2 673 64.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 4.2e-267 926.0 601 75.2
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.9e-265 919.5 552 81.5
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 6.5e-252 875.5 1593 36.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 3.7e-247 859.8 796 61.3
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 9.1e-206 722.2 847 42.3
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 8.3e-199 699.1 426 78.2
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 9.0e-161 572.8 329 83.9
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.1e-158 565.8 376 72.9
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 6.0e-157 560.1 605 59.8
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 7.6e-136 490.0 633 53.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 6.1e-125 453.8 698 40.5
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.8e-124 452.2 888 33.2
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.0e-111 409.8 336 65.8
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 6.5e-111 407.1 246 75.2
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.1e-107 396.4 241 79.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-105 389.4 429 45.7
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.7e-101 374.4 529 51.0
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.2e-95 355.5 213 76.1
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.7e-80 305.4 399 53.9
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.7e-79 302.8 202 74.3
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.4e-75 288.1 177 73.4
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.1e-68 266.9 176 71.0
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 1.7e-63 249.6 153 75.8
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-49 203.4 201 49.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 6.0e-48 198.0 442 40.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.0e-47 195.7 115 81.7
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.5e-46 193.4 129 69.0
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 5.8e-43 181.4 198 59.6
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 1.7e-42 179.9 99 91.9
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.6e-37 163.3 169 52.1
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 2.1e-37 162.9 287 48.4
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.5e-35 156.8 130 58.5
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 3.9e-31 142.1 205 44.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 5.6e-30 138.3 123 55.3
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.8e-28 133.3 111 60.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 3.8e-26 125.6 88 67.0
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 7.1e-25 121.3 83 68.7
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.7e-24 119.4 64 85.9
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.7e-24 119.4 288 40.6
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.0e-23 117.5 73 78.1
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 3.0e-23 115.9 93 64.5
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 5.1e-23 115.2 63 88.9
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 9.6e-22 110.9 214 36.4
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 4.0e-20 105.5 75 73.3
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 3.8e-18 99.0 71 63.4
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.1e-17 97.4 98 48.0
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 1.4e-17 97.1 58 74.1
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.9e-17 96.7 57 84.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.0e-15 89.4 51 76.5
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.5e-14 86.3 127 51.2
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 4.3e-14 85.5 288 36.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.6e-13 83.6 94 48.9
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.3e-12 78.6 50 78.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 9.0e-12 77.8 50 70.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.4e-11 75.9 52 71.2
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 3.8e-10 72.4 111 39.6
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 5.0e-10 72.0 95 41.1
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 5.5e-09 68.6 166 30.1
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.2e-08 67.4 108 38.9
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 7.9e-08 64.7 44 72.7
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.9e-07 62.4 68 47.1
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 6.7e-07 61.6 42 61.9
Prupe.2G098900 Prunus persica HOM05D001950 ORTHO05D001926 6.7e-07 61.6 111 33.3
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 2.5e-06 59.7 161 29.8
RcHm_v2.0_Chr1g0341241 Rosa chinensis HOM05D001950 ORTHO05D001926 5.7e-06 58.5 89 36.0
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 9.7e-06 57.8 44 59.1


User provided reference genes

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