Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.8e-277 958.0 478 100.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 4.4e-251 870.9 478 90.6
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.3e-245 852.8 505 84.2
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 5.3e-244 847.4 477 87.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 5.3e-244 847.4 477 87.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.8e-231 805.8 479 81.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.3e-231 805.4 479 81.2
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 5.1e-231 804.3 479 82.5
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.5e-230 802.0 478 80.8
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 9.0e-228 793.5 479 79.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.2e-227 793.1 478 78.7
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.8e-226 788.1 490 78.4
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.1e-225 786.6 480 80.0
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.2e-224 783.1 481 80.9
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.7e-224 781.9 479 80.8
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 3.5e-224 781.6 479 79.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.3e-223 778.9 480 79.4
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.1e-223 777.7 478 79.1
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 8.7e-223 776.9 479 78.9
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.9e-222 775.8 479 78.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.3e-222 774.6 484 77.9
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 9.6e-222 773.5 479 77.7
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.3e-221 773.1 479 79.3
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.8e-221 771.9 485 78.1
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 8.2e-221 770.4 479 78.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.1e-220 770.0 479 78.5
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.4e-220 768.8 479 77.2
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.1e-220 768.5 484 77.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 4.1e-220 768.1 484 77.9
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 9.0e-220 766.9 479 79.1
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.2e-219 766.5 480 77.3
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.6e-219 765.4 496 76.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.6e-219 765.4 479 79.1
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.6e-219 765.4 479 78.1
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.4e-219 765.0 479 76.8
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.7e-218 762.7 479 78.9
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.9e-218 761.9 481 76.5
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 5.0e-218 761.1 479 76.6
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.2e-217 758.4 480 76.7
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 7.1e-217 757.3 479 77.0
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.6e-216 756.1 483 75.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.7e-216 755.4 483 76.2
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 2.7e-216 755.4 479 76.4
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.5e-216 755.0 484 76.0
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.3e-215 752.3 483 76.0
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.8e-212 742.7 484 75.2
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 2.4e-212 742.3 483 74.7
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 4.1e-212 741.5 516 72.1
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.1e-212 741.5 482 75.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.3e-210 736.5 484 74.2
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.9e-209 732.6 477 74.4
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 2.5e-209 732.3 480 74.4
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 3.6e-208 728.4 478 73.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 7.9e-208 727.2 480 72.7
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 5.1e-207 724.5 481 74.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 6.7e-207 724.2 478 73.6
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 8.8e-207 723.8 482 72.2
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.2e-205 719.2 481 73.2
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 3.7e-205 718.4 479 72.9
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.1e-204 716.8 479 72.2
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.4e-204 715.7 478 73.0
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 9.1e-204 713.8 482 71.4
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.5e-203 713.0 480 72.7
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 2.0e-203 712.6 446 76.0
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 2.6e-203 712.2 491 71.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 2.6e-203 712.2 454 76.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.6e-203 712.2 483 72.0
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 5.9e-203 711.1 482 71.0
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.3e-202 709.9 478 74.3
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.3e-202 709.9 482 71.2
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.3e-202 709.9 482 71.4
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.7e-202 709.5 480 72.3
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 5.0e-202 708.0 480 72.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 8.5e-202 707.2 481 72.3
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.1e-201 706.8 481 73.0
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.9e-201 706.1 481 72.1
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 4.2e-201 704.9 478 71.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 5.5e-201 704.5 480 71.5
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.6e-200 703.0 415 81.0
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.0e-199 700.3 478 71.5
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.4e-199 699.9 480 71.0
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 3.0e-199 698.7 480 70.6
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.0e-199 698.7 480 70.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 3.0e-199 698.7 478 70.7
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 2.6e-198 695.7 480 70.6
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 2.6e-198 695.7 480 70.6
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 4.4e-198 694.9 480 70.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 9.7e-198 693.7 569 63.1
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.7e-197 693.0 507 67.7
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.2e-197 692.6 498 68.3
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 4.8e-197 691.4 489 71.4
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 3.1e-196 688.7 478 71.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.5e-195 686.4 504 67.5
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.0e-195 686.0 487 69.2
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 5.9e-195 684.5 488 70.5
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 3.8e-194 681.8 478 69.9
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 3.6e-192 675.2 432 75.0
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.4e-191 673.3 478 68.0
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 3.7e-189 665.2 497 66.6
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 4.8e-189 664.8 464 72.2
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.1e-188 660.6 483 67.5
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.2e-187 660.2 479 66.4
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 6.5e-186 654.4 517 65.6
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.5e-185 653.3 478 65.5
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 3.2e-185 652.1 429 73.9
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 8.8e-183 644.0 481 68.2
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 8.8e-183 644.0 477 65.0
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.8e-180 636.3 415 73.7
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 8.0e-176 620.9 480 65.0
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.5e-174 616.7 558 58.6
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 3.4e-174 615.5 423 74.2
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.0e-170 604.0 486 60.1
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.8e-167 593.2 475 62.7
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.3e-165 587.0 490 60.2
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 6.4e-165 584.7 476 58.4
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.5e-161 572.8 413 69.2
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.9e-154 548.9 496 59.3
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 8.1e-152 541.2 357 75.4
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 6.6e-146 521.5 479 57.0
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.4e-103 380.9 253 69.6
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.0e-98 364.8 597 37.7
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 6.3e-96 355.5 528 43.0
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.6e-91 340.9 259 65.6
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.9e-84 317.4 211 77.3
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.7e-82 308.9 182 75.3
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 8.8e-82 308.5 384 49.0
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 8.2e-80 302.0 221 63.3
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.9e-77 293.5 250 58.0
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.0e-74 285.0 539 35.6
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 7.5e-73 278.9 184 81.5
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.0e-65 254.2 175 66.9
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 3.5e-62 243.4 265 50.2
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 6.3e-56 222.6 430 35.8
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.4e-55 221.5 481 33.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.9e-52 211.1 189 58.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.1e-44 185.3 382 34.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.9e-40 170.6 212 49.5
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.6e-38 164.9 456 27.9
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.6e-38 164.9 451 29.5
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.5e-33 146.0 220 39.1
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 7.3e-28 129.4 181 48.6
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.7e-21 108.2 65 83.1
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.1e-18 99.0 65 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.9e-15 88.2 118 42.4
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.4e-15 87.8 65 69.2
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 3.0e-13 80.9 107 45.8
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 3.6e-11 73.9 69 58.0
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 6.2e-11 73.2 68 58.8
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 9.0e-10 69.3 70 51.4
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-09 68.2 256 24.2
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.2e-08 64.7 83 49.4


User provided reference genes

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