Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 1.0e-66 256.5 123 100.0
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 6.9e-47 190.7 95 95.8
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 6.9e-47 190.7 95 95.8
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 9.0e-47 190.3 95 94.7
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 1.2e-46 189.9 95 95.8
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 3.4e-46 188.3 95 93.7
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 4.5e-46 188.0 95 92.6
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 4.5e-46 188.0 95 92.6
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 5.8e-46 187.6 95 93.7
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 7.6e-46 187.2 95 94.7
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 7.6e-46 187.2 95 93.7
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 7.6e-46 187.2 95 93.7
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 7.6e-46 187.2 95 93.7
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 7.6e-46 187.2 95 93.7
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 7.6e-46 187.2 95 93.7
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 9.9e-46 186.8 95 93.7
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 1.3e-45 186.4 95 93.7
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 1.7e-45 186.0 95 92.6
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 2.2e-45 185.7 95 93.7
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 2.2e-45 185.7 95 92.6
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 2.9e-45 185.3 95 92.6
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 3.8e-45 184.9 95 93.7
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 3.8e-45 184.9 94 93.6
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 3.8e-45 184.9 94 93.6
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 3.8e-45 184.9 95 92.6
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 4.9e-45 184.5 95 91.6
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 4.9e-45 184.5 95 92.6
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 6.4e-45 184.1 95 91.6
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 6.4e-45 184.1 95 92.6
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 8.4e-45 183.7 95 91.6
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 8.4e-45 183.7 95 91.6
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 8.4e-45 183.7 95 90.5
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.1e-44 183.3 95 91.6
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 1.1e-44 183.3 95 91.6
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 1.1e-44 183.3 95 90.5
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 1.4e-44 183.0 95 90.5
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 1.4e-44 183.0 95 90.5
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 1.4e-44 183.0 95 92.6
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 1.4e-44 183.0 95 91.6
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 1.4e-44 183.0 96 88.5
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 1.4e-44 183.0 95 90.5
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 1.9e-44 182.6 95 91.6
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 1.9e-44 182.6 95 90.5
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 2.4e-44 182.2 95 90.5
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 2.4e-44 182.2 95 91.6
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 3.2e-44 181.8 95 91.6
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 3.2e-44 181.8 95 91.6
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 4.2e-44 181.4 95 90.5
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 4.2e-44 181.4 94 91.5
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 4.2e-44 181.4 95 90.5
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 5.4e-44 181.0 94 91.5
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 5.4e-44 181.0 95 90.5
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 5.4e-44 181.0 95 89.5
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 5.4e-44 181.0 95 90.5
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 5.4e-44 181.0 95 90.5
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 5.4e-44 181.0 95 90.5
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 7.1e-44 180.6 107 80.4
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 7.1e-44 180.6 107 80.4
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 7.1e-44 180.6 107 80.4
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 9.3e-44 180.3 94 89.4
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 9.3e-44 180.3 95 90.5
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 1.2e-43 179.9 95 89.5
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 1.2e-43 179.9 95 89.5
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 1.2e-43 179.9 96 88.5
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 1.6e-43 179.5 95 88.4
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 1.6e-43 179.5 95 88.4
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 1.6e-43 179.5 95 90.5
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.6e-43 179.5 95 89.5
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 1.6e-43 179.5 108 81.5
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 1.6e-43 179.5 95 90.5
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 1.6e-43 179.5 95 89.5
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 2.1e-43 179.1 95 88.4
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 2.1e-43 179.1 95 88.4
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 2.1e-43 179.1 95 88.4
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 2.1e-43 179.1 95 88.4
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 2.7e-43 178.7 95 88.4
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 2.7e-43 178.7 95 89.5
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 3.5e-43 178.3 95 89.5
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 3.5e-43 178.3 95 88.4
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 3.5e-43 178.3 95 88.4
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 3.5e-43 178.3 95 89.5
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 4.6e-43 177.9 94 89.4
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.6e-43 177.9 95 88.4
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.6e-43 177.9 95 88.4
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 4.6e-43 177.9 95 88.4
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 4.6e-43 177.9 95 87.4
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 4.6e-43 177.9 95 89.5
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 7.9e-43 177.2 95 87.4
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 7.9e-43 177.2 95 87.4
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 7.9e-43 177.2 95 88.4
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 7.9e-43 177.2 95 89.5
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 1.0e-42 176.8 95 87.4
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 1.0e-42 176.8 95 87.4
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 1.0e-42 176.8 95 88.4
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 1.3e-42 176.4 95 87.4
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 1.3e-42 176.4 95 86.3
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.3e-42 176.4 95 88.4
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 1.3e-42 176.4 95 88.4
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 1.8e-42 176.0 95 87.4
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 2.3e-42 175.6 95 87.4
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 3.0e-42 175.3 95 87.4
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 3.0e-42 175.3 95 86.3
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 3.0e-42 175.3 95 86.3
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 3.0e-42 175.3 95 86.3
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 8.7e-42 173.7 95 86.3
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 1.1e-41 173.3 95 86.3
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.5e-41 172.9 94 87.2
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 2.5e-41 172.2 96 86.5
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 9.6e-41 170.2 94 85.1
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.1e-39 166.8 95 84.2
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 1.2e-38 163.3 119 69.7
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 8.4e-37 157.1 99 78.8
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 1.0e-29 133.7 95 71.6
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.7e-29 132.9 95 71.6
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 6.5e-29 131.0 77 79.2
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 5.7e-25 117.9 86 62.8
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 7.4e-25 117.5 86 66.3
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 1.1e-23 113.6 85 61.2
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 9.0e-23 110.5 88 58.0
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 2.9e-21 105.5 86 57.0
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 6.5e-21 104.4 59 84.7
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 1.2e-19 100.1 91 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 3.6e-19 98.6 86 53.5
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 1.8e-18 96.3 52 86.5
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 1.8e-18 96.3 51 88.2
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 2.5e-17 92.4 92 48.9
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 1.7e-16 89.7 54 75.9
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 6.9e-15 84.3 51 76.5
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 6.9e-15 84.3 52 78.8
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 1.5e-14 83.2 94 53.2
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 4.5e-14 81.6 44 84.1
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 5.0e-13 78.2 55 65.5
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 2.3e-10 69.3 43 76.7


User provided reference genes

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