Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1968.0 1020 100.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1357.0 1004 73.0
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1252.7 971 70.0
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1238.4 1009 67.6
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1192.9 995 66.0
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1182.5 995 65.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 3.1e-270 935.6 1001 55.0
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.0e-260 904.0 985 53.5
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 6.1e-258 894.8 996 52.4
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.0e-257 892.5 972 53.5
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 9.1e-254 880.9 987 53.4
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 5.6e-251 871.7 973 53.0
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 5.6e-251 871.7 963 54.9
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.4e-249 867.1 967 53.4
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.8e-249 866.7 975 54.9
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 6.8e-249 864.8 995 51.9
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.7e-245 852.8 1009 50.5
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 4.6e-245 852.0 974 52.6
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 2.3e-241 839.7 986 51.0
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.7e-239 833.6 969 54.2
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.2e-239 833.2 982 53.4
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 7.8e-237 824.7 982 53.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.3e-236 823.9 1001 50.2
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.7e-236 823.5 980 51.9
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 4.7e-234 815.5 980 51.6
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 8.1e-234 814.7 983 51.4
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.6e-232 809.7 990 49.8
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 3.4e-232 809.3 991 49.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.3e-225 786.6 962 50.6
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 3.1e-225 786.2 984 49.1
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 3.7e-223 779.2 986 48.5
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 2.1e-221 773.5 975 48.3
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.5e-219 767.3 969 49.8
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.2e-217 758.8 941 48.9
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.2e-213 747.7 960 48.2
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 2.7e-213 746.5 959 48.0
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.5e-213 746.1 962 48.9
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 6.0e-213 745.3 977 46.9
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.8e-209 733.8 1017 45.2
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 3.4e-208 729.6 983 48.1
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 8.4e-207 724.9 965 47.4
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 6.0e-205 718.8 1001 46.1
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 3.3e-203 713.0 1003 45.2
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 7.4e-203 711.8 978 46.4
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.6e-202 710.7 971 45.6
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 3.4e-200 703.0 973 46.5
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.9e-198 697.2 988 44.6
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.6e-197 694.1 974 44.9
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.6e-197 694.1 974 45.5
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 6.0e-197 692.2 961 46.3
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 7.9e-197 691.8 974 45.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.0e-192 677.2 974 45.5
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.3e-188 664.5 962 44.4
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 6.7e-188 662.1 971 45.0
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 9.6e-187 658.3 981 42.7
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 9.6e-187 658.3 959 43.7
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 3.1e-185 653.3 964 44.0
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 7.2e-182 642.1 955 43.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 9.3e-182 641.7 1004 42.6
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 2.5e-179 633.6 971 43.0
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 8.2e-178 628.6 974 44.6
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.4e-177 627.9 962 44.0
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 7.9e-173 612.1 929 43.1
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.4e-169 601.3 1035 40.2
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.1e-166 591.7 990 42.3
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 7.9e-165 585.5 967 40.7
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 3.3e-163 580.1 937 41.7
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 7.4e-163 578.9 946 41.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.1e-157 560.8 967 39.8
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 8.0e-157 558.9 954 40.4
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 8.0e-157 558.9 989 39.5
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 4.4e-155 553.1 925 40.6
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 7.5e-155 552.4 967 40.8
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-151 541.6 996 37.9
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 6.5e-151 539.3 920 41.7
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.5e-150 537.3 1002 39.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 9.1e-145 518.8 952 39.3
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 2.1e-141 507.7 959 37.3
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 8.0e-141 505.8 963 37.6
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 5.2e-140 503.1 941 38.8
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.6e-136 491.5 974 37.7
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 2.0e-136 491.1 969 37.9
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 7.7e-136 489.2 1012 37.9
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.7e-136 489.2 874 40.3
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 8.6e-135 485.7 641 46.6
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 8.6e-135 485.7 969 37.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.1e-133 481.1 958 37.7
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.0e-132 478.8 673 46.2
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.2e-132 476.5 982 37.8
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 7.5e-131 472.6 959 37.1
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.2e-130 471.1 951 37.5
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.4e-129 468.4 966 37.2
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 8.0e-125 452.6 958 36.3
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.3e-124 451.1 958 36.1
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 5.2e-124 449.9 953 36.1
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.5e-123 448.4 949 36.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.0e-123 448.0 949 36.1
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.7e-119 434.9 885 35.9
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 8.1e-117 426.0 590 48.8
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.9e-114 416.8 428 55.8
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 3.9e-111 407.1 928 35.0
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 4.1e-105 387.1 818 35.6
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 9.9e-99 365.9 319 58.9
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.8e-98 364.0 819 35.5
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 7.8e-96 356.3 726 35.0
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 1.3e-93 349.0 596 41.8
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 4.0e-92 344.0 612 36.8
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 6.4e-90 336.7 268 66.4
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 7.1e-89 333.2 330 57.0
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.6e-85 322.0 409 47.4
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 7.1e-81 306.6 307 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 6.7e-79 300.1 368 49.7
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 3.1e-76 291.2 298 56.7
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 9.3e-73 279.6 357 47.3
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-66 258.1 327 48.6
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.3e-63 248.4 615 34.3
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.6e-61 242.3 295 45.1
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.6e-59 235.0 328 42.7
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.9e-58 231.5 550 37.6
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 5.1e-55 220.7 346 41.9
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.6e-54 218.4 521 32.6
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.1e-48 198.7 235 50.2
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 3.0e-47 194.9 548 29.7
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.0e-46 192.2 240 48.3
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.2e-43 183.0 152 59.2
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 6.5e-42 177.2 187 50.8
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 8.8e-39 166.8 357 33.6
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.2e-38 166.4 343 33.8
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 9.4e-33 146.7 626 27.2
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.8e-26 124.8 251 36.3
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 5.0e-26 124.4 527 26.0
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 7.2e-25 120.6 433 28.2
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 8.0e-24 117.1 316 29.7
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 1.2e-19 103.2 208 45.7
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 5.6e-17 94.4 433 24.9
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.1e-16 90.9 61 67.2
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.0e-14 85.9 76 56.6
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 2.4e-12 79.0 130 43.8
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 7.0e-12 77.4 525 25.9
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-10 73.6 230 28.7


User provided reference genes

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