Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.0e-155 552.0 317 100.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.5e-95 352.4 304 72.0
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 6.2e-92 341.7 307 72.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 9.0e-91 337.8 307 72.3
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-85 320.9 310 70.3
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-85 320.9 310 70.3
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 4.8e-68 262.3 314 61.5
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.4e-67 260.8 316 59.5
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.1e-67 259.6 312 59.6
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 4.1e-59 232.6 315 57.1
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.9e-56 223.8 311 56.9
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.9e-56 223.8 316 57.0
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 6.7e-54 215.3 317 54.3
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 4.4e-53 212.6 322 53.1
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.7e-52 210.7 309 51.5
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 6.3e-52 208.8 317 53.3
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 6.3e-52 208.8 285 58.6
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.4e-51 207.6 321 50.8
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 3.1e-51 206.5 317 52.7
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.5e-50 204.1 315 53.7
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 7.7e-50 201.8 318 51.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 2.9e-49 199.9 299 46.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.4e-48 197.6 305 51.5
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.9e-48 197.2 314 48.4
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 7.2e-48 195.3 315 46.3
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.7e-47 193.4 318 48.4
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 4.7e-47 192.6 314 52.2
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.4e-46 191.0 270 51.5
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.8e-46 190.7 315 47.3
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 8.8e-46 188.3 269 50.6
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.1e-45 188.0 303 50.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.1e-45 188.0 318 50.6
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 2.0e-45 187.2 299 51.5
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.6e-45 186.8 268 51.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 2.6e-45 186.8 269 50.6
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 2.6e-45 186.8 269 50.6
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 5.7e-45 185.7 270 45.9
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.3e-44 184.5 310 47.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-44 184.1 268 51.9
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.1e-43 179.9 258 54.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 7.0e-43 178.7 262 55.0
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 7.0e-43 178.7 310 52.3
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 7.0e-43 178.7 318 43.7
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 9.1e-43 178.3 263 52.9
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 3.5e-42 176.4 303 46.2
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 4.5e-42 176.0 262 54.6
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 7.7e-42 175.3 269 54.3
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 7.7e-42 175.3 303 49.2
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.0e-41 174.9 271 54.6
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.2e-41 173.7 313 44.4
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 5.0e-41 172.6 322 49.1
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 6.5e-41 172.2 306 51.6
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 8.5e-41 171.8 307 48.5
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 9.4e-40 168.3 308 48.1
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 2.1e-39 167.2 308 52.3
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 3.6e-39 166.4 316 44.3
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 3.3e-37 159.8 261 52.1
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 5.7e-37 159.1 320 48.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.8e-36 156.8 220 57.3
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.8e-36 156.8 220 55.9
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 8.2e-36 155.2 278 51.4
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 7.0e-35 152.1 228 54.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.2e-34 151.4 311 42.8
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.6e-34 151.0 273 50.2
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.3e-33 147.9 177 58.2
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.7e-33 147.5 277 42.2
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 3.8e-33 146.4 190 58.9
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.9e-32 144.1 272 40.4
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.2e-32 143.3 267 40.8
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.2e-32 143.3 278 50.7
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 3.6e-31 139.8 313 42.8
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 6.1e-31 139.0 187 47.6
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 3.0e-30 136.7 262 43.5
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 8.8e-30 135.2 269 39.0
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 3.4e-29 133.3 164 58.5
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.4e-29 132.9 195 46.7
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 7.5e-29 132.1 266 43.6
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 4.8e-28 129.4 259 42.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 8.3e-28 128.6 121 78.5
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 8.3e-28 128.6 276 44.2
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.8e-27 127.5 246 46.3
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 5.4e-27 125.9 198 42.9
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 5.4e-27 125.9 261 46.7
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 7.0e-27 125.6 280 40.4
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 7.0e-27 125.6 258 45.0
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.6e-26 124.4 263 45.6
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 2.7e-26 123.6 311 43.7
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 5.9e-26 122.5 187 54.5
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.0e-25 121.7 325 41.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.5e-24 117.9 317 39.4
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 3.2e-24 116.7 271 43.5
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.1e-23 114.0 126 65.9
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.0e-21 107.5 270 41.1
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 9.8e-21 105.1 144 46.5
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.3e-20 104.8 260 39.6
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.3e-20 104.8 260 39.6
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.2e-20 104.0 267 41.9
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 3.7e-20 103.2 260 38.8
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 3.7e-20 103.2 260 38.8
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.9e-20 102.8 261 42.5
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.5e-18 96.7 203 38.9
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.0e-17 95.1 126 59.5
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-17 92.8 116 56.9
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-16 91.3 99 70.7
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.5e-16 91.3 275 37.8
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.5e-16 90.5 277 38.3
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 3.6e-15 86.7 142 46.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 2.3e-14 84.0 123 52.0
RcHm_v2.0_Chr5g0003101 Rosa chinensis HOM05D002890 ORTHO05D005855 8.9e-14 82.0 181 44.8
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-13 81.3 182 44.5
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.0e-13 80.9 243 38.7
RcHm_v2.0_Chr5g0003151 Rosa chinensis HOM05D002890 ORTHO05D005855 1.7e-12 77.8 182 43.4
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 3.7e-12 76.6 235 33.2
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 7.0e-11 72.4 270 35.2
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 3.5e-10 70.1 64 59.4
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.3e-09 68.2 51 64.7
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.7e-09 67.8 142 43.7
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 5.0e-09 66.2 64 57.8
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 5.0e-09 66.2 57 61.4
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 5.6e-08 62.8 65 55.4


User provided reference genes

Program Settings