Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 5.6e-53 210.7 108 100.0
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.4e-35 152.1 103 75.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.8e-30 136.0 101 67.3
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.8e-30 136.0 96 71.9
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.8e-30 136.0 96 71.9
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.1e-29 133.3 104 67.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 2.5e-29 132.1 101 64.4
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 9.7e-29 130.2 102 63.7
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.3e-28 129.8 103 67.0
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-28 129.8 101 63.4
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.2e-28 129.0 105 63.8
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.8e-27 125.9 102 63.7
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 4.1e-27 124.8 101 60.4
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 3.4e-26 121.7 97 59.8
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.9e-25 118.6 94 62.8
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 5.0e-25 117.9 100 59.0
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.0e-25 117.9 97 55.7
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.0e-25 117.9 97 55.7
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 6.5e-25 117.5 89 69.7
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.5e-25 117.5 94 61.7
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 8.5e-25 117.1 96 66.7
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 8.5e-25 117.1 96 66.7
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-24 116.7 97 55.7
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 2.5e-24 115.5 97 64.9
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 3.2e-24 115.2 100 58.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.2e-24 115.2 101 56.4
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 4.2e-24 114.8 101 58.4
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.5e-24 114.4 94 60.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.7e-23 112.1 101 58.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 3.6e-23 111.7 102 60.8
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 7.9e-23 110.5 93 61.3
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 7.9e-23 110.5 91 63.7
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 7.9e-23 110.5 101 57.4
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.9e-22 108.2 101 56.4
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 3.9e-22 108.2 104 55.8
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 8.8e-22 107.1 96 54.2
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 8.8e-22 107.1 101 58.4
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.5e-21 106.3 95 61.1
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.0e-21 105.9 100 51.0
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 4.4e-21 104.8 100 53.0
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 4.4e-21 104.8 91 62.6
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 9.7e-21 103.6 90 57.8
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 9.7e-21 103.6 91 61.5
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.7e-20 102.8 96 60.4
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.2e-20 102.4 96 60.4
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 6.3e-20 100.9 95 53.7
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.2e-20 100.5 103 57.3
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.1e-19 100.1 102 57.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.4e-19 99.8 101 50.5
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.4e-19 99.0 93 52.7
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.4e-19 99.0 93 60.2
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.1e-19 98.6 98 50.0
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 4.1e-19 98.2 90 56.7
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 4.1e-19 98.2 98 55.1
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 9.1e-19 97.1 105 49.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 9.1e-19 97.1 93 50.5
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.2e-18 96.7 109 54.1
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.5e-18 96.3 89 50.6
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.6e-18 95.5 108 47.2
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.4e-18 95.1 93 51.6
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.4e-18 95.1 94 52.1
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 4.5e-18 94.7 85 57.6
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 5.9e-18 94.4 101 47.5
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.7e-18 94.0 101 50.5
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.0e-17 93.6 101 49.5
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-17 93.2 94 52.1
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.3e-17 93.2 97 44.3
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.3e-17 93.2 97 44.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.2e-17 92.4 98 56.1
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.9e-17 92.0 105 46.7
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.9e-17 92.0 87 55.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.9e-17 92.0 101 48.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-16 90.1 93 49.5
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-16 89.7 94 50.0
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.9e-16 89.4 103 46.6
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.5e-16 89.0 87 50.6
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.5e-16 89.0 101 45.5
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 4.2e-16 88.2 87 52.9
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.5e-16 87.8 97 46.4
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.2e-15 86.7 84 51.2
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.6e-15 86.3 87 50.6
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.6e-15 86.3 99 46.5
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.6e-15 86.3 89 55.1
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.1e-15 85.9 87 50.6
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.6e-15 85.1 96 46.9
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 6.1e-15 84.3 80 48.8
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.0e-14 83.6 95 48.4
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.4e-14 83.2 90 51.1
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.9e-14 81.6 96 46.9
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.9e-14 81.6 89 43.8
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.1e-13 80.1 91 47.3
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 2.0e-13 79.3 100 47.0
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 2.6e-13 79.0 89 42.7
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.4e-13 78.2 96 44.8
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.3e-12 76.6 93 48.4
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.3e-12 76.6 96 45.8
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.7e-12 76.3 93 48.4
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.8e-12 75.5 105 41.9
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.7e-12 75.1 94 41.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 3.7e-12 75.1 89 41.6
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 8.2e-12 73.9 64 56.2
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.1e-11 73.6 85 48.2
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 2.4e-11 72.4 104 46.2
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.1e-11 72.0 78 47.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 5.3e-11 71.2 95 47.4
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 5.3e-11 71.2 93 48.4
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 7.0e-11 70.9 102 42.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 9.1e-11 70.5 106 45.3
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 9.1e-11 70.5 107 37.4
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.6e-10 69.7 106 45.3
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.6e-10 69.7 94 42.6
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.0e-10 69.3 102 42.2
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 2.6e-10 68.9 105 45.7
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 5.9e-10 67.8 103 44.7
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 5.9e-10 67.8 103 44.7
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.0e-09 67.0 66 50.0
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.3e-09 66.6 97 43.3
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.3e-09 66.6 106 42.5
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.7e-09 66.2 103 43.7
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 2.2e-09 65.9 89 40.4
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 3.8e-09 65.1 103 43.7
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.8e-09 65.1 112 34.8
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 8.5e-09 63.9 105 42.9
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-08 63.5 103 42.7
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 2.5e-08 62.4 102 40.2
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 4.2e-08 61.6 61 50.8
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 5.5e-08 61.2 102 39.2
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 5.5e-08 61.2 103 41.7
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 5.5e-08 61.2 102 39.2
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.2e-07 60.1 102 39.2
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.2e-07 60.1 102 39.2
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.1e-07 59.3 85 44.7
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 2.1e-07 59.3 107 39.3
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 2.1e-07 59.3 107 39.3
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.7e-07 58.9 109 33.9
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 8.0e-07 57.4 64 46.9
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 8.0e-07 57.4 62 54.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.0e-06 57.0 98 39.8
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.0e-06 57.0 80 42.5
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.4e-06 56.6 118 33.9
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 3.0e-06 55.5 106 38.7
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 5.2e-06 54.7 79 41.8
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.7e-06 54.3 76 42.1
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 6.7e-06 54.3 109 33.0
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 6.7e-06 54.3 109 33.0
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 8.8e-06 53.9 109 32.1
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 8.8e-06 53.9 109 32.1


User provided reference genes

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