Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.6e-88 329.7 206 100.0
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 1.9e-65 253.1 206 69.4
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 3.2e-65 252.3 206 69.9
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 9.4e-65 250.8 206 68.9
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.8e-61 239.2 208 66.8
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 6.3e-53 211.5 198 62.6
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 4.7e-48 195.3 214 55.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 1.4e-47 193.7 199 58.3
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 6.7e-47 191.4 214 54.7
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 7.5e-46 188.0 200 56.0
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.3e-45 187.2 221 53.4
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 6.3e-45 184.9 200 58.0
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.1e-44 184.1 214 52.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.1e-44 182.6 215 53.5
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 7.0e-44 181.4 200 57.5
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.3e-42 177.2 200 56.0
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.3e-42 177.2 216 51.9
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.3e-42 177.2 216 51.9
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 5.0e-42 175.3 214 51.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 5.5e-41 171.8 209 53.6
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.6e-40 170.2 203 52.7
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 6.1e-40 168.3 200 50.5
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 8.0e-40 167.9 200 50.5
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 3.0e-39 166.0 192 56.8
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.2e-39 165.2 192 50.5
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 7.5e-38 161.4 212 50.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-37 160.6 215 50.7
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.2e-37 159.8 199 52.8
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.7e-37 159.1 215 50.7
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.3e-37 158.3 209 49.8
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 6.3e-37 158.3 192 49.5
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 8.3e-37 157.9 205 48.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.4e-36 157.1 191 48.2
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 4.1e-36 155.6 192 51.6
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.1e-36 155.6 208 49.5
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 7.0e-36 154.8 193 53.4
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.2e-35 154.1 197 50.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.7e-35 152.9 216 47.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.5e-35 152.5 192 58.3
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.3e-34 150.6 221 46.6
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.7e-34 150.2 211 46.4
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.7e-34 150.2 189 48.7
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.5e-33 147.1 204 47.1
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.5e-33 147.1 217 47.5
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.5e-33 146.4 199 47.7
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 4.2e-33 145.6 187 48.7
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.4e-31 140.6 194 48.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.0e-31 139.4 208 44.2
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.0e-31 139.4 193 49.2
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.0e-31 139.0 210 53.3
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 6.8e-31 138.3 189 45.5
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 8.9e-31 137.9 196 46.4
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.2e-30 137.5 193 47.2
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 2.0e-30 136.7 210 43.3
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 4.4e-30 135.6 192 45.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 7.5e-30 134.8 198 43.9
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 9.8e-30 134.4 195 46.2
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.3e-29 134.0 194 44.8
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.7e-29 133.7 185 45.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 8.3e-29 131.3 196 45.4
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.4e-28 130.6 182 46.2
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 2.4e-28 129.8 206 43.2
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.4e-28 128.6 201 45.3
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.4e-28 128.6 201 45.3
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 2.0e-27 126.7 182 45.1
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.7e-27 126.3 194 52.1
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.7e-27 126.3 186 45.2
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 7.8e-27 124.8 193 43.0
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 7.8e-27 124.8 200 41.5
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-26 124.0 199 45.2
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.3e-26 123.2 198 46.5
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.5e-25 120.6 174 46.6
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-25 120.2 167 44.3
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.5e-25 119.8 192 43.8
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 3.3e-25 119.4 191 42.9
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 4.3e-25 119.0 187 43.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 4.3e-25 119.0 181 44.8
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 4.3e-25 119.0 194 44.8
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 5.6e-25 118.6 184 44.6
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 7.3e-25 118.2 193 42.5
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.2e-24 117.5 148 52.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.1e-24 116.7 195 44.6
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.6e-24 115.9 218 38.5
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.8e-23 113.6 202 39.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.0e-23 112.8 181 43.1
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.2e-23 112.1 207 40.6
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-22 110.9 191 39.3
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.2e-22 110.9 192 40.1
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.0e-22 110.2 198 38.9
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 5.8e-22 108.6 192 41.1
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 9.8e-22 107.8 177 42.4
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 9.8e-22 107.8 187 38.5
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 6.4e-21 105.1 194 39.2
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.3e-21 104.8 176 42.6
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.8e-20 103.6 179 41.9
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 9.2e-20 101.3 188 42.6
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 4.6e-19 99.0 196 37.8
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.0e-18 97.8 178 46.6
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.0e-18 97.8 198 41.4
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.7e-18 97.1 181 43.1
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 3.0e-18 96.3 222 41.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.0e-18 96.3 204 37.7
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.0e-18 96.3 166 42.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.5e-17 94.0 190 40.5
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 2.5e-17 93.2 188 39.4
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.5e-17 93.2 192 39.1
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 3.3e-17 92.8 188 38.3
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 9.5e-17 91.3 178 39.9
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.2e-16 90.9 180 39.4
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.6e-16 90.5 191 37.2
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 2.1e-16 90.1 188 38.3
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.8e-16 89.7 168 39.3
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.6e-16 89.4 203 36.9
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.2e-16 88.6 191 37.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 8.0e-16 88.2 203 36.5
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 8.0e-16 88.2 203 36.5
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-15 87.8 193 37.3
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.1e-15 87.8 186 38.2
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.8e-15 87.0 203 36.5
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.1e-15 86.3 178 39.3
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 3.1e-15 86.3 184 35.9
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 5.2e-15 85.5 178 39.3
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 5.2e-15 85.5 176 40.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 5.2e-15 85.5 178 39.3
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 6.8e-15 85.1 64 67.2
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 6.8e-15 85.1 177 34.5
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 6.8e-15 85.1 165 37.6
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.6e-14 83.2 178 33.7
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 2.6e-14 83.2 186 39.2
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.6e-14 83.2 188 39.9
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 4.4e-14 82.4 186 38.2
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 4.4e-14 82.4 202 50.5
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.8e-14 82.0 196 32.1
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 7.5e-14 81.6 143 37.8
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.3e-13 80.9 178 38.8
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 2.2e-13 80.1 204 35.3
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.9e-13 79.7 206 32.0
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.9e-12 77.0 172 34.3
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.4e-12 76.6 193 36.3
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.4e-12 76.6 85 48.2
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 5.4e-12 75.5 64 62.5
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 7.0e-12 75.1 73 60.3
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 7.0e-12 75.1 169 35.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 9.2e-12 74.7 199 34.2
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 4.6e-11 72.4 181 35.4
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 6.0e-11 72.0 179 33.0
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 6.0e-11 72.0 151 37.1
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 1.7e-10 70.5 71 54.9
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 1.9e-09 67.0 64 56.2
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 3.3e-09 66.2 189 32.3
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 4.3e-09 65.9 209 31.1
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 5.6e-09 65.5 58 55.2
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.8e-08 63.2 63 57.1
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 3.6e-08 62.8 47 68.1
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 4.0e-07 59.3 178 33.1
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 4.0e-07 59.3 169 34.9
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 5.2e-07 58.9 208 28.8
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 6.8e-07 58.5 67 53.7
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 6.8e-07 58.5 70 51.4
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.5e-06 57.4 164 39.0
Zm00001eb369720 Zea mays HOM05D033938 ORTHO05D004706 1.5e-06 57.4 52 57.7
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 2.0e-06 57.0 42 69.0
Os01g0787400 Oryza sativa ssp. japonica HOM05D033938 ORTHO05D004706 3.4e-06 56.2 72 44.4
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 4.4e-06 55.8 68 42.6
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 5.8e-06 55.5 165 34.5


User provided reference genes

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