Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G067700 Carya illinoinensis HOM05D002065 ORTHO05D002050 1.4e-116 422.9 210 100.0
CiPaw.09G086500 Carya illinoinensis HOM05D002065 ORTHO05D002050 3.9e-50 202.2 208 56.7
QL05p075311 Quercus lobata HOM05D002065 ORTHO05D002050 4.0e-47 192.2 219 51.6
Cfa021640 Carpinus fangiana HOM05D002065 ORTHO05D002050 1.3e-40 170.6 186 53.2
TWI38G1606 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 4.6e-35 152.1 189 42.9
TAR626G1859 Trochodendron aralioides HOM05D002065 ORTHO05D002050 7.4e-33 144.8 175 45.7
CSS0011499 Camellia sinensis var. sinensis HOM05D002065 ORTHO05D002050 3.7e-32 142.5 189 39.7
Cfa021641 Carpinus fangiana HOM05D002065 ORTHO05D002050 1.4e-31 140.6 187 46.0
Haze_06727 Corylus avellana HOM05D004864 ORTHO05D005393 1.5e-30 137.1 116 62.1
Haze_06730 Corylus avellana HOM05D004864 ORTHO05D005393 1.5e-30 137.1 116 62.1
TWI38G1319 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.3e-29 134.0 183 42.1
Ciclev10017718m.g Citrus clementina HOM05D002065 ORTHO05D002050 1.2e-27 127.5 189 40.7
Hma1.2p1_0729F.1_g209600 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 1.8e-26 123.6 190 39.5
Nn1g03650 Nelumbo nucifera HOM05D002065 ORTHO05D002050 2.3e-26 123.2 191 40.3
SGA_v2.0_scaffold7G03888 Striga asiatica HOM05D002065 ORTHO05D002050 1.2e-22 110.9 190 36.3
TAR629G2849 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.6e-22 109.8 180 38.3
Rhsim13G0158000 Rhododendron simsii HOM05D002065 ORTHO05D002050 4.5e-22 109.0 185 37.3
Duzib235G0905 Durio zibethinus HOM05D002065 ORTHO05D002050 1.3e-21 107.5 208 35.1
MBI18_g40467_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.7e-21 107.1 183 35.5
MBI18_g06812_MAGBIO Magnolia biondii HOM05D004864 ORTHO05D002050 6.5e-21 105.1 177 35.0
Oeu037342.1 Olea europaea HOM05D002065 ORTHO05D002050 3.6e-19 99.4 190 32.6
TAR626G1743 Trochodendron aralioides HOM05D002065 ORTHO05D002050 3.6e-19 99.4 182 33.5
CiPaw.09G085400 Carya illinoinensis HOM05D002065 ORTHO05D002050 6.1e-19 98.6 193 35.2
Duzib235G0538 Durio zibethinus HOM05D002065 ORTHO05D002050 1.8e-18 97.1 177 34.5
Sopen02g024810 Solanum pennellii HOM05D002065 ORTHO05D002050 2.3e-18 96.7 179 38.0
Oeu051228.1 Olea europaea HOM05D002065 ORTHO05D002050 3.0e-18 96.3 185 34.6
Thecc.06G213400 Theobroma cacao HOM05D002065 ORTHO05D002050 3.9e-18 95.9 177 36.2
CiPaw.09G086400 Carya illinoinensis HOM05D002065 ORTHO05D002050 5.1e-18 95.5 192 34.4
ClCG03G005020 Citrullus lanatus HOM05D002065 ORTHO05D002050 5.1e-18 95.5 186 34.9
PGSC0003DMG400002090 Solanum tuberosum HOM05D002065 ORTHO05D002050 5.1e-18 95.5 180 37.2
MD05G1340600 Malus domestica HOM05D002065 ORTHO05D002050 8.8e-18 94.7 180 35.0
QL05p075313 Quercus lobata HOM05D002065 ORTHO05D002050 1.1e-17 94.4 182 33.0
Gohir.A10G015700 Gossypium hirsutum HOM05D002065 ORTHO05D002050 3.3e-17 92.8 177 35.0
TAR629G2752 Trochodendron aralioides HOM05D002065 ORTHO05D002050 3.3e-17 92.8 181 32.6
Gorai.011G017400 Gossypium raimondii HOM05D002065 ORTHO05D002050 4.3e-17 92.4 177 34.5
Nn1g03652 Nelumbo nucifera HOM05D002065 ORTHO05D002050 1.3e-16 90.9 191 32.5
MD10G1314100 Malus domestica HOM05D002065 ORTHO05D002050 2.2e-16 90.1 180 32.8
Prupe.4G027000 Prunus persica HOM05D002065 ORTHO05D002050 2.2e-16 90.1 177 34.5
Manes.17G029300 Manihot esculenta HOM05D002065 ORTHO05D002050 3.7e-16 89.4 187 33.7
ATR0794G057 Amborella trichopoda HOM05D002065 ORTHO05D002050 4.8e-16 89.0 169 32.0
Hma1.2p1_0729F.1_g209610 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 4.8e-16 89.0 177 31.1
FvH4_3g02720 Fragaria vesca HOM05D002065 ORTHO05D002050 1.4e-15 87.4 196 32.1
Oeu037345.1 Olea europaea HOM05D002065 ORTHO05D002050 1.4e-15 87.4 131 35.1
Gohir.D10G015700 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.8e-15 87.0 177 33.3
ATR0794G125 Amborella trichopoda HOM05D002065 ORTHO05D002050 5.3e-15 85.5 169 32.0
Nn1g07008 Nelumbo nucifera HOM05D002065 ORTHO05D002050 6.9e-15 85.1 176 31.2
Rhsim13G0158100 Rhododendron simsii HOM05D002065 ORTHO05D002050 9.1e-15 84.7 178 31.5
RcHm_v2.0_Chr5g0037701 Rosa chinensis HOM05D002065 ORTHO05D002050 9.1e-15 84.7 176 30.1
Aqoxy4G02006 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 1.2e-14 84.3 180 30.6
SalBow8G3023 Salvia bowleyana HOM05D002065 ORTHO05D002050 1.2e-14 84.3 183 30.1
Dinv18891 Davidia involucrata HOM05D002065 ORTHO05D002050 2.0e-14 83.6 171 32.2
FAN25G0723 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.4e-14 82.8 193 31.1
TAR626G0982 Trochodendron aralioides HOM05D002065 ORTHO05D002050 3.4e-14 82.8 182 34.1
Hma1.2p1_1869F.1_g306050 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 4.5e-14 82.4 173 30.1
CSS0011359 Camellia sinensis var. sinensis HOM05D002065 ORTHO05D002050 1.3e-13 80.9 196 31.1
Migut.M01810 Erythranthe guttata HOM05D002065 ORTHO05D002050 1.7e-13 80.5 186 29.6
FAN21G3944 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.2e-13 80.1 193 30.6
MBI18_g44238_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 2.2e-13 80.1 179 32.4
Cpa.g.sc81.25 Carica papaya HOM05D002065 ORTHO05D002050 2.9e-13 79.7 177 31.6
Duzib192G0918 Durio zibethinus HOM05D002065 ORTHO05D002050 3.8e-13 79.3 179 30.7
Hma1.2p1_1564F.1_g290830 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 3.8e-13 79.3 182 29.1
MBI18_g41997_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 3.8e-13 79.3 179 32.4
MBI18_g44237_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 3.8e-13 79.3 180 32.2
Dinv20008 Davidia involucrata HOM05D002065 ORTHO05D002050 5.0e-13 79.0 166 31.3
Lsat_1_v5_gn_7_16941 Lactuca sativa HOM05D002065 ORTHO05D002050 5.0e-13 79.0 183 33.3
TWI38G0471 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 5.0e-13 79.0 183 29.0
VMungo1215G2268 Vigna mungo HOM05D002065 ORTHO05D002050 6.5e-13 78.6 181 30.9
MD03G1210900 Malus domestica HOM05D002065 ORTHO05D002050 8.5e-13 78.2 186 30.6
QL08p013247 Quercus lobata HOM05D002065 ORTHO05D002050 1.1e-12 77.8 174 30.5
Atru.chr2.3214 Acer truncatum HOM05D002065 ORTHO05D002050 1.4e-12 77.4 188 31.9
Gohir.D06G151332 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.9e-12 77.0 177 28.8
Gorai.010G176400 Gossypium raimondii HOM05D002065 ORTHO05D002050 1.9e-12 77.0 177 28.8
MD03G1211000 Malus domestica HOM05D002065 ORTHO05D002050 1.9e-12 77.0 179 30.7
Medtr7g109260 Medicago truncatula HOM05D002065 ORTHO05D002050 2.5e-12 76.6 178 31.5
PSO675G3505 Papaver somniferum HOM05D002065 ORTHO05D002050 2.5e-12 76.6 184 28.3
Hma1.2p1_1869F.1_g306060 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 4.2e-12 75.9 150 32.7
PGR004G0337 Punica granatum HOM05D002065 ORTHO05D002050 4.2e-12 75.9 195 30.8
THA.LOC104817885 Tarenaya hassleriana HOM05D002065 ORTHO05D002050 4.2e-12 75.9 173 30.6
SalBow8G4741 Salvia bowleyana HOM05D002065 ORTHO05D002050 5.5e-12 75.5 159 28.3
Haze_09616 Corylus avellana HOM05D002065 ORTHO05D002050 7.2e-12 75.1 184 28.8
TWI38G0302 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 7.2e-12 75.1 181 28.2
Actinidia35318 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.2e-11 74.3 153 28.1
MD11G1225800 Malus domestica HOM05D002065 ORTHO05D002050 1.2e-11 74.3 183 29.5
Nitab4.5_0000092g0090 Nicotiana tabacum HOM05D002065 ORTHO05D002050 1.2e-11 74.3 182 29.7
Duzib213G0394 Durio zibethinus HOM05D002065 ORTHO05D002050 1.6e-11 73.9 182 29.7
CAN.G140.7 Capsicum annuum HOM05D002065 ORTHO05D002050 2.1e-11 73.6 182 31.3
Gohir.A06G144950 Gossypium hirsutum HOM05D002065 ORTHO05D002050 2.1e-11 73.6 177 28.8
ClCG05G014750 Citrullus lanatus HOM05D002065 ORTHO05D002050 2.7e-11 73.2 172 32.6
CsaV3_3G023120 Cucumis sativus L. HOM05D002065 ORTHO05D002050 2.7e-11 73.2 154 33.1
MBI18_g44236_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 2.7e-11 73.2 177 30.5
SGA_v2.0_scaffold27G11640 Striga asiatica HOM05D002065 ORTHO05D002050 3.6e-11 72.8 177 30.5
COL.COLO4_09575 Corchorus olitorius HOM05D002065 ORTHO05D002050 6.1e-11 72.0 176 31.2
Dinv22303 Davidia involucrata HOM05D002065 ORTHO05D002050 7.9e-11 71.6 166 27.7
Aa31LG8G7400 Aethionema arabicum HOM05D002065 ORTHO05D002050 1.0e-10 71.2 191 27.2
CAN.G246.4 Capsicum annuum HOM05D000980 ORTHO05D000649 1.0e-10 71.2 153 29.4
TWI39G0180 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.0e-10 71.2 181 30.4
MBI02_g10994_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 2.3e-10 70.1 189 28.6
Mapoly0007s0205 Marchantia polymorpha HOM05D000973 ORTHO05D000652 3.0e-10 69.7 112 33.0
PSO017G0621 Papaver somniferum HOM05D002065 ORTHO05D002050 3.0e-10 69.7 184 25.5
PGSC0003DMG400024324 Solanum tuberosum HOM05D000980 ORTHO05D000649 3.0e-10 69.7 156 28.2
Psat3g020720 Pisum sativum HOM05D002065 ORTHO05D002050 6.7e-10 68.6 168 30.4
MELO3C018104.2 Cucumis melo HOM05D002065 ORTHO05D002050 1.1e-09 67.8 154 30.5
Sp3g18650 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.1e-09 67.8 157 31.2
Oeu007632.1 Olea europaea HOM05D002065 ORTHO05D002050 1.5e-09 67.4 177 24.9
Peaxi162Scf00392g00045 Petunia axillaris HOM05D000733 ORTHO05D000649 2.0e-09 67.0 158 27.2
Cfa020412 Carpinus fangiana HOM05D002065 ORTHO05D002050 2.6e-09 66.6 185 28.1
Gorai.013G163600 Gossypium raimondii HOM05D002065 ORTHO05D002050 3.3e-09 66.2 166 30.1
Sed0026241 Sechium edule HOM05D002065 ORTHO05D002050 3.3e-09 66.2 159 32.1
Duzib213G0251 Durio zibethinus HOM05D002065 ORTHO05D002050 5.7e-09 65.5 176 29.5
Potri.004G023400 Populus trichocarpa HOM05D002065 ORTHO05D002050 5.7e-09 65.5 179 27.9
Nn1g07007 Nelumbo nucifera HOM05D002065 ORTHO05D002050 9.7e-09 64.7 183 28.4
Ciclev10016810m.g Citrus clementina HOM05D002065 ORTHO05D002050 1.3e-08 64.3 179 30.2
Gorai.002G082700 Gossypium raimondii HOM05D002065 ORTHO05D002050 1.3e-08 64.3 182 28.6
PSO675G1570 Papaver somniferum HOM05D002065 ORTHO05D002050 1.7e-08 63.9 164 27.4
Actinidia09932 Actinidia chinensis HOM05D002065 ORTHO05D002050 2.2e-08 63.5 178 28.7
CSS0043169 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000649 2.8e-08 63.2 159 29.6
Nitab4.5_0005152g0040 Nicotiana tabacum HOM05D000733 ORTHO05D000649 3.7e-08 62.8 156 26.9
Sed0007986 Sechium edule HOM05D002065 ORTHO05D002050 4.8e-08 62.4 159 32.7
DCAR_022526 Daucus carota HOM05D002065 ORTHO05D002050 6.3e-08 62.0 191 31.9
Nitab4.5_0001361g0260 Nicotiana tabacum HOM05D000733 ORTHO05D000649 1.1e-07 61.2 166 25.9
PSO541G2674 Papaver somniferum HOM05D002065 ORTHO05D002050 1.1e-07 61.2 155 27.7
CsaV3_1G011100 Cucumis sativus L. HOM05D060685 ORTHO05D002050 1.4e-07 60.8 184 27.2
Gohir.D01G061300 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.4e-07 60.8 182 27.5
Oeu007631.2 Olea europaea HOM05D002065 ORTHO05D002050 1.4e-07 60.8 160 25.0
CSS0035712 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000649 1.8e-07 60.5 159 28.3
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 2.4e-07 60.1 170 24.1
ECA236G0028 Erigeron canadensis HOM05D002065 ORTHO05D002050 2.4e-07 60.1 103 35.0
Manes.17G029200 Manihot esculenta HOM05D004864 ORTHO05D005393 2.4e-07 60.1 175 27.4
Nn1g03649 Nelumbo nucifera HOM05D004864 ORTHO05D005393 2.4e-07 60.1 174 25.3
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 5.3e-07 58.9 165 27.3
AagrBONN_evm.TU.Sc2ySwM_369.295 Anthoceros agrestis HOM05D000973 ORTHO05D000644 5.3e-07 58.9 150 28.0
Eucgr.D00819 Eucalyptus grandis HOM05D004864 ORTHO05D005393 5.3e-07 58.9 175 26.3
FAN25G2771 Fragaria x ananassa HOM05D000039 ORTHO05D000366 5.3e-07 58.9 180 25.6
Gohir.A06G144900 Gossypium hirsutum HOM05D004864 ORTHO05D005393 5.3e-07 58.9 175 28.6
Hma1.2p1_0729F.1_g209590 Hydrangea macrophylla HOM05D004864 ORTHO05D005393 5.3e-07 58.9 174 25.9
CiPaw.09G086600 Carya illinoinensis HOM05D004864 ORTHO05D005393 7.0e-07 58.5 175 26.9
FAN21G0279 Fragaria x ananassa HOM05D000039 ORTHO05D005393 7.0e-07 58.5 180 25.0
Gohir.D06G151400 Gossypium hirsutum HOM05D004864 ORTHO05D005393 7.0e-07 58.5 175 27.4
RcHm_v2.0_Chr5g0004071 Rosa chinensis HOM05D004864 ORTHO05D005393 7.0e-07 58.5 174 26.4
Aa31LG2G9080 Aethionema arabicum HOM05D004864 ORTHO05D005393 9.1e-07 58.2 186 24.2
Dinv20009 Davidia involucrata HOM05D004864 ORTHO05D005393 9.1e-07 58.2 187 25.1
FvH4_3g02710 Fragaria vesca HOM05D004864 ORTHO05D005393 9.1e-07 58.2 174 25.3
Lj4C249T6 Lonicera japonica HOM05D000973 ORTHO05D000652 9.1e-07 58.2 117 35.0
PSO541G3356 Papaver somniferum HOM05D002065 ORTHO05D002050 9.1e-07 58.2 164 26.2
PGSC0003DMG400000476 Solanum tuberosum HOM05D000733 ORTHO05D000649 9.1e-07 58.2 153 29.4
CAN.G546.58 Capsicum annuum HOM05D000733 ORTHO05D000649 1.2e-06 57.8 143 27.3
Cfa021639 Carpinus fangiana HOM05D004864 ORTHO05D005393 1.2e-06 57.8 176 27.8
Solyc11g066490.1 Solanum lycopersicum HOM05D000733 ORTHO05D000649 1.2e-06 57.8 151 25.8
CiPaw.11G184300 Carya illinoinensis HOM05D002065 ORTHO05D002050 1.5e-06 57.4 179 25.7
Duzib170G0757 Durio zibethinus HOM05D002065 ORTHO05D002050 1.5e-06 57.4 182 26.4
MBI02_g10993_MAGBIO Magnolia biondii HOM05D004864 ORTHO05D005393 1.5e-06 57.4 155 27.1
Sabra11G0120300 Salix brachista HOM05D002065 ORTHO05D002050 1.5e-06 57.4 175 29.1
Sopen11g026240 Solanum pennellii HOM05D000733 ORTHO05D000649 1.5e-06 57.4 151 25.2
vmacro20443 Vaccinium macrocarpon HOM05D000973 ORTHO05D000652 2.0e-06 57.0 121 34.7
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 2.6e-06 56.6 180 25.6
Duzib160G0710 Durio zibethinus HOM05D004864 ORTHO05D005393 2.6e-06 56.6 175 26.3
Peaxi162Scf00192g00005 Petunia axillaris HOM05D002065 ORTHO05D002050 2.6e-06 56.6 147 27.9
Sabra11G0140000 Salix brachista HOM05D002540 ORTHO05D002672 2.6e-06 56.6 157 29.3
CDE06G0023 Ceratophyllum demersum HOM05D000733 ORTHO05D000649 3.5e-06 56.2 161 25.5
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 4.5e-06 55.8 180 25.6
Cpa.g.sc81.26 Carica papaya HOM05D004864 ORTHO05D005393 4.5e-06 55.8 176 26.7
Duzib192G0146 Durio zibethinus HOM05D004864 ORTHO05D005393 5.9e-06 55.5 175 26.3
HanXRQChr13g0403571 Helianthus annuus HOM05D000733 ORTHO05D000649 5.9e-06 55.5 157 21.7
Hma1.2p1_1564F.1_g290840 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 5.9e-06 55.5 93 32.3
Rhsim13G0157900 Rhododendron simsii HOM05D008626 ORTHO05D005393 5.9e-06 55.5 154 27.9
Lsat_1_v5_gn_1_65060 Lactuca sativa HOM05D000733 ORTHO05D000649 7.7e-06 55.1 169 21.9
GSVIVG01012622001 Vitis vinifera HOM05D004864 ORTHO05D005393 7.7e-06 55.1 175 24.6


User provided reference genes

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