Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 1.2e-88 329.7 156 100.0
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 4.6e-72 274.6 152 83.6
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.9e-70 269.2 152 80.3
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.6e-69 266.2 152 79.6
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 3.6e-69 265.0 151 78.8
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 1.4e-68 263.1 154 78.6
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 2.4e-68 262.3 154 79.2
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 1.5e-67 259.6 154 77.3
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 9.9e-67 256.9 150 79.3
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 1.1e-65 253.4 152 73.7
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 2.1e-64 249.2 152 75.0
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 7.8e-64 247.3 150 75.3
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 1.3e-63 246.5 151 76.2
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 1.7e-63 246.1 148 75.7
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.5e-62 242.3 153 71.9
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 2.1e-61 239.2 150 73.3
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 4.0e-60 235.0 150 69.3
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 5.3e-60 234.6 152 70.4
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 2.0e-59 232.6 150 70.0
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 7.6e-59 230.7 149 69.1
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 9.9e-59 230.3 148 70.9
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.7e-58 229.6 150 70.7
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 2.9e-58 228.8 148 70.3
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 3.8e-58 228.4 150 71.3
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 3.8e-58 228.4 149 70.5
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 1.1e-57 226.9 149 70.5
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 1.1e-57 226.9 148 68.2
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.4e-57 226.5 147 71.4
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 4.2e-57 224.9 150 68.0
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 9.3e-57 223.8 150 67.3
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 9.3e-57 223.8 150 67.3
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 3.5e-56 221.9 150 67.3
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 4.6e-56 221.5 150 68.0
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 4.6e-56 221.5 150 68.0
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 7.9e-56 220.7 148 67.6
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 1.0e-55 220.3 151 66.2
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.3e-55 219.2 147 68.0
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 3.9e-55 218.4 150 66.7
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 3.9e-55 218.4 131 77.1
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 8.7e-55 217.2 149 68.5
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.5e-54 216.5 144 70.1
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 7.4e-54 214.2 147 68.7
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 9.6e-54 213.8 148 64.2
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 4.8e-53 211.5 151 65.6
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 4.8e-53 211.5 150 63.3
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 4.8e-53 211.5 153 66.7
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 4.8e-53 211.5 153 64.1
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.1e-52 208.8 147 63.3
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.1e-52 208.8 147 63.3
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 1.5e-51 206.5 153 66.7
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 3.4e-51 205.3 147 66.7
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 4.5e-51 204.9 148 63.5
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 5.8e-51 204.5 149 67.1
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.3e-50 203.4 151 63.6
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 1.3e-50 203.4 151 63.6
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 1.7e-50 203.0 154 64.9
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 2.2e-50 202.6 151 62.9
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 2.2e-50 202.6 151 62.9
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 2.2e-50 202.6 149 64.4
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 4.9e-50 201.4 151 62.9
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 6.4e-50 201.1 151 58.9
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.1e-49 200.3 150 58.7
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 1.1e-49 200.3 148 60.1
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 3.2e-49 198.7 151 61.6
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 9.3e-49 197.2 151 60.9
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.6e-48 196.4 111 79.3
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 2.7e-48 195.7 151 60.3
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 4.6e-48 194.9 147 59.9
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 8.7e-47 190.7 151 59.6
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 3.3e-46 188.7 151 58.3
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 9.6e-46 187.2 151 58.9
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.6e-45 186.4 151 58.3
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 2.1e-45 186.0 151 58.3
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 5.3e-44 181.4 127 66.1
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 2.6e-43 179.1 150 58.0
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 1.3e-39 166.8 120 63.3
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 8.2e-37 157.5 124 59.7
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 5.3e-36 154.8 154 51.9
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 3.2e-33 145.6 100 70.0
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 1.7e-29 133.3 139 48.2
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 1.4e-28 130.2 98 69.4
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 2.0e-22 109.8 154 40.3
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 1.8e-20 103.2 125 44.0
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 3.9e-15 85.5 52 73.1
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 1.8e-12 76.6 56 57.1
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 4.1e-12 75.5 63 50.8
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 1.5e-06 57.0 84 36.9


User provided reference genes

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