Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.2e-158 563.1 293 100.0
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.2e-142 510.0 293 89.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.0e-136 490.3 293 86.3
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 3.6e-134 481.9 293 84.3
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 5.1e-133 478.0 293 84.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 4.3e-132 474.9 293 82.3
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 7.4e-132 474.2 293 84.0
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 9.7e-132 473.8 327 78.0
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.3e-131 473.4 293 83.3
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.3e-131 473.4 294 82.0
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.5e-129 466.5 292 81.5
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.0e-129 466.1 294 79.9
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 2.0e-129 466.1 294 79.9
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 4.5e-129 464.9 293 81.9
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.0e-128 463.8 293 81.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.7e-128 463.0 295 81.4
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 2.9e-128 462.2 293 80.9
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.8e-128 461.8 293 81.2
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 5.0e-128 461.5 293 80.2
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 8.5e-128 460.7 295 81.4
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.4e-127 459.9 294 79.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.9e-127 459.5 294 79.6
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 4.2e-127 458.4 293 79.9
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 9.4e-127 457.2 293 79.5
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.1e-126 456.1 295 80.0
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 2.7e-126 455.7 293 80.2
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.7e-126 455.7 293 78.5
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 7.9e-126 454.1 294 78.9
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.0e-125 453.8 296 79.1
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.4e-125 453.4 291 81.1
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 3.9e-125 451.8 293 78.5
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 8.8e-125 450.7 295 78.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 8.8e-125 450.7 295 78.0
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.1e-124 450.3 292 79.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 2.0e-124 449.5 294 77.6
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.6e-124 449.1 293 77.8
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.4e-124 447.6 293 77.5
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 7.4e-124 447.6 297 78.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.7e-123 446.4 319 74.3
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 4.8e-123 444.9 292 78.8
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.4e-122 443.4 295 77.6
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.4e-122 443.4 293 77.1
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.7e-120 436.4 323 71.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.9e-120 435.6 295 76.6
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.9e-120 435.6 294 76.5
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 2.9e-120 435.6 290 75.9
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 7.2e-119 431.0 293 75.8
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.2e-118 430.3 294 75.9
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.1e-118 429.5 294 75.5
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.0e-117 427.2 294 75.5
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 6.7e-117 424.5 294 75.2
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 6.7e-117 424.5 296 75.0
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.7e-116 421.4 296 74.7
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 7.4e-116 421.0 294 72.8
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.7e-115 419.9 294 75.2
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 2.2e-115 419.5 328 69.8
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 2.8e-115 419.1 295 72.2
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 3.7e-115 418.7 293 75.1
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 4.8e-115 418.3 294 74.1
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 6.3e-115 417.9 317 69.7
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 8.2e-115 417.5 291 72.5
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.8e-114 416.4 294 73.8
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 2.4e-114 416.0 294 74.8
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 9.1e-114 414.1 294 71.4
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.6e-113 412.5 295 71.9
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.0e-112 410.6 294 72.8
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.0e-112 410.6 297 73.7
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.9e-112 409.1 293 72.7
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.9e-112 409.1 294 70.7
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 5.0e-112 408.3 295 69.8
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.1e-111 407.1 306 71.9
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.1e-111 407.1 306 71.9
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.1e-111 407.1 306 71.9
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 7.2e-111 404.4 295 69.2
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.1e-110 401.4 321 67.6
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.0e-109 400.6 298 68.5
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.8e-109 399.8 295 68.5
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 2.3e-109 399.4 276 77.2
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 3.0e-109 399.1 294 72.8
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.0e-109 398.7 294 71.1
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 5.2e-109 398.3 291 70.8
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 8.8e-109 397.5 294 71.1
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.5e-108 396.7 352 60.2
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.5e-108 396.7 295 70.8
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.6e-108 396.0 293 71.7
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 9.7e-108 394.0 293 71.3
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.3e-107 393.7 297 69.4
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.2e-107 392.9 293 67.6
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 2.8e-107 392.5 305 70.2
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.1e-106 390.6 294 71.8
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 4.1e-106 388.7 293 69.6
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.2e-105 387.1 295 67.1
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.7e-105 386.0 293 69.6
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 2.7e-105 386.0 296 67.9
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 5.0e-104 381.7 272 71.7
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 1.1e-103 380.6 237 78.9
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.5e-103 380.2 296 69.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 9.4e-103 377.5 293 69.3
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 8.0e-102 374.4 297 69.0
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.0e-101 374.0 285 70.9
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.2e-101 371.7 237 79.7
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.8e-99 365.9 292 67.5
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.8e-98 363.2 238 75.2
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.8e-98 363.2 338 61.5
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.8e-98 363.2 296 63.5
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 4.1e-98 362.1 294 65.0
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 5.4e-98 361.7 310 63.9
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 7.7e-97 357.8 288 67.7
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.9e-96 355.9 289 67.8
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.3e-95 352.4 295 65.4
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 4.2e-95 352.1 286 65.0
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.0e-93 347.4 301 62.5
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.3e-93 346.3 294 61.9
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 9.8e-92 340.9 314 63.1
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.1e-90 337.4 294 61.9
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.4e-90 337.0 239 70.7
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.1e-90 335.9 294 62.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.3e-88 329.7 294 65.0
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.5e-87 327.0 295 62.4
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.2e-86 323.9 196 83.2
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.6e-86 323.6 196 84.7
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.4e-84 315.8 295 61.7
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.1e-79 300.8 275 63.6
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 3.3e-79 299.3 205 74.6
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 5.6e-79 298.5 293 54.3
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.8e-78 296.2 251 62.2
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.1e-77 294.3 307 52.4
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 5.2e-77 292.0 295 56.6
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 7.5e-76 288.1 303 55.1
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.2e-75 286.6 217 71.9
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.4e-74 283.9 205 71.7
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.7e-73 279.6 289 55.7
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.7e-72 276.9 275 56.4
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.3e-72 276.6 274 55.1
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.2e-70 270.8 368 45.9
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 6.2e-70 268.5 207 67.6
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.4e-66 257.3 289 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.9e-63 246.9 219 57.1
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.6e-62 242.7 196 65.8
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 4.7e-62 242.3 327 46.5
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 2.2e-59 233.4 317 42.9
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 3.3e-55 219.5 182 65.4
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 6.9e-53 211.8 333 40.5
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 7.3e-47 191.8 123 75.6
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 8.7e-40 168.3 333 35.4
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 3.2e-34 149.8 101 75.2
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.0e-32 144.8 90 80.0
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 4.5e-28 129.4 310 34.2
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.5e-25 119.8 76 69.7
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 1.5e-23 114.4 82 74.4
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.3e-21 105.9 100 61.0
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.2e-20 104.8 229 39.7
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.2e-19 100.5 260 37.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 3.2e-18 96.7 333 29.7
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.2e-17 94.7 60 76.7
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.1e-17 92.4 142 43.7
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 1.8e-16 90.9 56 82.1
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.3e-07 60.1 98 38.8
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.3e-07 60.1 41 63.4
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.7e-06 57.8 37 64.9


User provided reference genes

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