Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.4e-277 959.1 534 100.0
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.2e-196 690.3 542 74.4
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.1e-181 640.6 554 68.4
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.6e-180 636.7 549 68.1
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 4.6e-156 555.4 525 62.9
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.5e-143 513.8 545 56.0
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 2.5e-141 506.5 547 54.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 6.7e-139 498.4 511 58.1
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.5e-138 497.3 517 57.6
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.3e-137 494.2 550 60.2
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.6e-137 493.8 517 56.1
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.7e-137 492.7 545 57.8
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 3.2e-133 479.6 527 59.8
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 5.5e-133 478.8 518 55.4
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.2e-133 478.4 517 55.9
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.4e-131 474.2 530 57.0
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.1e-131 472.2 518 55.4
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.2e-129 466.8 518 55.2
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.4e-128 464.2 554 52.7
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.0e-127 460.3 528 55.5
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.3e-126 457.6 580 53.6
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.7e-126 457.2 524 54.4
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 5.5e-125 452.2 553 54.4
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.6e-124 450.7 553 50.3
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.8e-123 447.2 483 56.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.3e-123 446.8 543 51.4
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.0e-122 443.7 568 54.9
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.1e-120 436.4 553 54.6
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.1e-120 436.0 545 52.1
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 5.3e-120 435.6 562 48.6
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.0e-118 431.4 473 54.5
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 6.5e-118 428.7 519 55.7
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.9e-117 427.2 514 54.5
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.7e-116 423.3 510 50.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 3.0e-115 419.9 539 51.6
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.9e-115 419.5 468 56.0
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 6.7e-115 418.7 516 50.4
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.6e-114 416.8 529 55.0
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.3e-114 416.4 518 50.2
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 7.4e-114 415.2 534 55.1
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.8e-113 413.3 535 54.8
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.8e-113 412.5 514 47.9
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.8e-113 412.5 513 48.3
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.2e-113 411.8 513 48.5
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.8e-112 410.6 512 49.0
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.2e-111 407.9 521 50.7
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 3.5e-111 406.4 515 49.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.5e-111 406.4 362 61.3
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.3e-110 404.4 519 50.7
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 6.5e-110 402.1 516 50.6
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.1e-109 401.4 522 47.9
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 5.5e-109 399.1 405 56.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.7e-108 396.0 516 49.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 6.1e-108 395.6 358 60.3
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 8.0e-108 395.2 538 46.5
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 5.2e-107 392.5 518 47.9
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 8.8e-107 391.7 392 56.4
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 7.5e-106 388.7 524 49.6
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.8e-105 386.7 513 49.3
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 6.3e-105 385.6 512 46.1
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.1e-104 384.8 474 51.5
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 5.9e-103 379.0 476 50.2
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 2.2e-102 377.1 516 47.1
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 6.5e-102 375.6 544 43.9
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.5e-101 374.4 483 48.7
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.9e-101 374.0 520 46.7
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.2e-101 372.9 512 45.5
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 5.5e-101 372.5 543 47.0
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 8.0e-100 368.6 495 49.7
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 1.8e-99 367.5 538 45.2
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.3e-99 367.1 516 48.4
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 4.0e-99 366.3 362 55.0
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 8.8e-99 365.2 513 45.6
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.2e-98 364.8 455 50.5
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.6e-98 363.6 519 46.6
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.4e-98 363.2 524 48.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.3e-97 361.3 515 48.9
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.2e-95 354.8 516 44.6
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.3e-94 350.5 482 44.2
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.3e-94 350.5 372 54.8
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.1e-93 348.2 505 45.9
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 3.6e-92 343.2 488 44.3
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.8e-91 340.9 541 40.9
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.8e-91 340.9 511 42.5
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 3.0e-91 340.1 523 43.6
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 3.0e-91 340.1 536 44.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.0e-91 340.1 372 54.0
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.5e-90 337.8 367 49.9
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.0e-90 337.4 365 51.2
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.8e-89 333.6 509 47.0
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.1e-88 331.6 465 46.2
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 9.2e-88 328.6 488 45.3
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.2e-87 328.2 486 44.0
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 2.0e-87 327.4 469 43.7
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.3e-86 323.9 487 43.7
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 6.6e-86 322.4 475 44.4
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 6.6e-86 322.4 475 44.4
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 6.6e-86 322.4 475 44.4
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.6e-86 322.4 352 52.8
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 8.6e-86 322.0 370 50.3
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 4.7e-84 316.2 451 44.3
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 4.7e-84 316.2 451 44.3
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 4.7e-84 316.2 451 44.3
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 4.0e-83 313.2 316 56.0
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.2e-82 311.6 370 48.9
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-82 310.8 368 49.7
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.0e-82 310.8 366 51.1
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.6e-82 310.5 371 49.6
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 3.4e-82 310.1 514 42.2
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 4.4e-82 309.7 516 42.6
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 5.8e-82 309.3 516 42.8
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 5.8e-82 309.3 516 42.8
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-80 304.7 516 43.4
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.9e-80 304.3 519 40.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.2e-80 303.5 350 50.6
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.0e-78 298.5 370 48.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-78 298.1 513 41.1
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.7e-78 297.7 509 40.3
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.3e-78 297.4 494 38.9
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.6e-78 295.8 365 47.7
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.9e-77 294.3 481 42.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 3.3e-77 293.5 402 47.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 9.5e-77 292.0 513 40.0
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 8.0e-76 288.9 401 43.9
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.0e-75 286.6 449 43.2
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 3.2e-72 276.9 330 49.7
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 7.0e-72 275.8 458 40.6
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 9.2e-72 275.4 557 39.0
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.0e-70 271.9 342 50.3
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.9e-70 270.0 450 38.2
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.1e-67 261.9 342 47.7
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 6.4e-65 252.7 478 38.9
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.1e-64 250.0 312 46.8
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.3e-62 244.2 303 51.2
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.5e-61 241.5 213 61.5
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.4e-59 235.0 299 46.8
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.4e-58 229.9 442 36.7
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.2e-55 221.9 438 34.7
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.5e-53 214.2 545 33.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.5e-53 214.2 545 33.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 3.9e-46 190.3 520 32.3
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.2e-40 170.6 183 51.9
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.2e-40 170.6 224 42.4
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.3e-40 169.1 245 41.2
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.7e-39 167.5 182 51.6
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.8e-36 156.8 431 30.4
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.0e-34 151.4 574 28.0
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.2e-33 147.9 124 58.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.4e-32 145.2 250 36.8
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.2e-32 143.7 182 50.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.2e-32 143.7 529 26.7
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-31 141.7 416 28.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.3e-29 134.0 335 31.3
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.0e-25 122.5 602 24.3
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.1e-24 119.0 469 25.6
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.1e-22 110.2 367 29.2
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.9e-21 108.2 159 44.0
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 7.4e-21 106.3 93 59.1
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.9e-19 99.8 108 48.1
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.0e-17 95.9 93 55.9
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 9.1e-11 72.8 53 69.8
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.9e-06 57.4 56 41.1


User provided reference genes

Program Settings