Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2503.8 1265 100.0
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2399.8 1258 95.0
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2359.7 1259 93.3
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2355.9 1275 93.2
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2344.7 1258 92.5
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2342.0 1259 92.1
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2339.7 1256 93.2
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2339.7 1258 92.8
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2337.0 1261 91.7
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2334.3 1259 91.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2330.4 1259 91.9
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2330.1 1259 91.7
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2329.3 1261 92.0
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2327.0 1261 91.4
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2325.8 1258 92.1
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2321.6 1259 91.5
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2321.6 1258 91.6
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2320.0 1259 90.9
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2318.9 1262 91.4
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2316.6 1274 90.8
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2316.6 1258 90.6
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2313.9 1258 91.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2312.3 1259 90.9
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2311.2 1259 91.0
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2311.2 1260 91.6
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2311.2 1258 91.1
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2310.8 1264 91.1
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2310.8 1260 90.8
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2310.4 1264 91.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2309.6 1259 90.9
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1259 91.0
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1266 90.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2305.0 1260 91.2
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2304.6 1259 90.4
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2304.2 1258 90.9
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2300.4 1260 90.7
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2300.0 1261 90.8
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2300.0 1258 90.6
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2298.1 1259 90.9
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2297.7 1259 90.9
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2294.6 1259 89.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2291.5 1259 90.6
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2291.2 1260 90.6
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2290.0 1258 89.9
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2289.6 1258 90.0
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2288.8 1258 89.5
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2286.9 1260 90.2
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2286.9 1258 89.8
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2285.4 1262 89.5
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2283.8 1258 89.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2282.7 1258 89.7
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2282.7 1258 89.3
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2281.5 1258 89.6
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2281.5 1258 89.6
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2280.8 1259 90.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2280.4 1261 89.4
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2280.0 1260 90.1
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2279.2 1260 89.9
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2277.3 1258 90.2
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2270.0 1259 89.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2265.7 1260 88.7
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2263.0 1260 89.1
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2261.9 1269 88.3
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2261.1 1260 89.0
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2253.4 1258 89.6
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2253.0 1259 88.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2251.9 1259 88.0
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2250.7 1259 87.9
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2250.7 1260 88.7
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2244.9 1262 87.2
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2241.5 1260 87.9
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2241.1 1260 87.9
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2240.3 1260 87.2
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2223.0 1261 86.8
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2218.0 1211 90.8
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2217.2 1323 83.1
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2213.7 1260 86.6
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2211.8 1260 86.5
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2208.3 1238 88.2
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2206.0 1261 86.5
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2206.0 1259 86.9
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2200.6 1260 86.4
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2199.9 1261 86.3
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2196.8 1231 87.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2195.2 1261 86.2
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2192.2 1260 86.4
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2190.6 1260 86.3
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2189.5 1259 86.3
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2187.5 1260 86.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2184.1 1261 85.7
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2184.1 1261 85.7
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2179.1 1261 85.5
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2179.1 1261 85.5
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2177.5 1261 85.4
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2174.1 1269 85.6
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2164.8 1261 85.5
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2151.7 1259 85.4
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2141.3 1258 85.4
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2141.3 1260 85.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2122.4 1231 84.3
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2111.6 1284 82.8
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2087.4 1226 83.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2015.4 1120 88.7
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1993.8 1108 88.6
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 1978.0 1219 78.4
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 1969.9 1220 78.4
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 1962.6 1210 79.2
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1946.8 1226 77.4
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1946.8 1226 77.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 1941.8 1226 76.8
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1776.5 1258 74.2
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1712.6 1277 72.5
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1677.5 1209 68.2
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1662.9 1212 68.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1487.6 1258 63.9
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1465.7 789 91.3
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1413.3 770 90.5
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1293.5 685 93.4
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1280.8 685 92.1
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1142.1 675 84.0
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1082.0 669 82.1
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 4.0e-299 1031.9 571 87.2
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 4.9e-289 998.4 595 83.9
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 9.3e-264 914.4 588 78.9
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.0e-262 909.4 1199 44.0
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.5e-245 854.0 470 89.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 5.3e-243 845.5 470 88.7
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 3.7e-236 822.8 471 86.2
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.1e-221 774.6 471 82.4
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.5e-208 731.1 398 89.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.9e-139 501.5 1249 31.0
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 4.2e-131 473.8 1312 29.5
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 6.8e-81 307.0 1157 27.0
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 4.3e-67 261.2 147 87.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.7e-47 196.1 107 90.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.8e-42 178.7 197 54.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 2.2e-31 142.5 139 51.8
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 6.7e-20 104.4 61 83.6
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.9e-19 102.8 51 96.1


User provided reference genes

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