Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.5e-233 811.2 405 100.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 6.9e-205 717.2 406 87.7
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.0e-204 715.7 406 87.4
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 2.2e-198 695.7 404 85.4
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 2.2e-198 695.7 404 85.4
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.8e-198 694.5 406 84.7
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 4.8e-198 694.5 404 84.9
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 4.8e-190 667.9 408 81.1
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.1e-189 665.2 408 80.6
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 3.8e-187 658.3 408 79.2
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.9e-186 656.0 408 79.2
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.9e-186 656.0 408 79.2
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.2e-186 655.2 408 78.7
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 9.4e-186 653.7 408 79.4
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 2.1e-185 652.5 408 78.2
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.7e-185 652.1 408 78.4
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 6.1e-185 651.0 408 77.7
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 3.0e-184 648.7 408 78.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 6.8e-184 647.5 410 77.8
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.2e-182 642.5 408 77.2
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 6.3e-182 641.0 411 75.4
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 6.3e-182 641.0 409 77.8
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 5.4e-181 637.9 408 77.5
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 9.1e-181 637.1 398 78.6
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.2e-180 636.7 398 78.6
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.0e-180 636.0 408 78.2
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 4.5e-180 634.8 408 77.9
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.0e-179 633.6 408 76.7
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.3e-179 633.3 409 76.3
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.7e-179 632.9 404 77.7
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 6.5e-179 630.9 408 76.5
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 6.5e-179 630.9 408 77.5
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.2e-178 628.6 408 76.2
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 7.2e-178 627.5 408 75.0
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 9.5e-178 627.1 408 76.2
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.7e-177 624.8 408 76.0
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.7e-177 624.8 408 76.0
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.8e-176 622.9 406 75.4
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 3.0e-176 622.1 408 75.2
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 5.2e-176 621.3 408 74.8
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.5e-175 619.8 408 74.3
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 2.6e-175 619.0 406 75.4
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 75.7
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.4e-173 613.2 407 74.0
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 2.4e-173 612.5 406 73.6
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 4.1e-173 611.7 406 74.6
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 5.4e-173 611.3 406 73.4
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.4e-173 611.3 407 75.4
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 7.0e-173 610.9 403 75.4
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.2e-172 610.1 406 73.6
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.0e-172 609.4 399 73.7
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 5.9e-172 607.8 410 73.7
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.0e-171 607.1 407 74.4
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 2.3e-171 605.9 408 73.0
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 2.9e-171 605.5 407 73.0
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 3.8e-171 605.1 407 74.0
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 8.6e-171 604.0 407 72.7
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 2.5e-170 602.4 409 73.3
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.3e-170 602.1 408 71.3
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 4.3e-170 601.7 412 72.1
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 9.5e-170 600.5 408 73.5
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 2.8e-169 599.0 412 71.4
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 6.1e-169 597.8 408 71.3
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.0e-168 597.0 410 70.7
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.4e-168 596.7 408 71.6
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.4e-168 596.7 412 71.6
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.8e-168 596.3 412 71.4
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 2.3e-168 595.9 407 71.7
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 6.8e-168 594.3 412 70.9
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 6.8e-168 594.3 412 70.9
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 6.8e-168 594.3 412 70.9
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 6.8e-168 594.3 407 72.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.2e-167 593.6 398 74.1
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.0e-167 592.8 407 71.7
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.0e-167 592.8 437 69.6
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 5.7e-167 591.3 408 71.1
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.3e-166 590.1 405 72.1
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.7e-166 588.6 407 70.3
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 3.7e-166 588.6 409 70.7
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 8.3e-166 587.4 406 71.2
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 8.3e-166 587.4 405 70.6
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.1e-165 587.0 409 70.9
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 4.6e-164 581.6 409 70.2
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.9e-163 578.6 400 70.0
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 5.0e-163 578.2 412 69.9
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 5.0e-163 578.2 408 68.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 3.3e-162 575.5 400 70.8
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 4.3e-162 575.1 409 70.4
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 5.6e-162 574.7 408 68.4
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 7.3e-162 574.3 408 68.4
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.2e-161 573.5 409 69.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.6e-161 573.2 403 72.0
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.8e-161 572.4 408 71.1
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.7e-161 571.6 403 71.7
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 6.2e-161 571.2 409 68.9
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.4e-160 570.1 408 68.4
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 6.8e-160 567.8 406 68.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.3e-158 563.5 406 70.2
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.9e-158 562.4 404 67.1
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 8.3e-158 560.8 410 68.8
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.4e-157 559.3 404 67.3
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 3.2e-157 558.9 411 67.9
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 4.1e-157 558.5 423 65.7
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 4.1e-157 558.5 404 67.1
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 9.2e-157 557.4 408 70.3
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.9e-154 549.7 357 75.1
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.2e-152 541.6 360 74.2
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 8.9e-152 540.8 492 58.7
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.2e-151 540.4 404 65.8
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 1.2e-151 540.4 418 64.4
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.7e-150 535.4 408 65.9
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 6.4e-150 534.6 311 86.2
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.8e-144 516.5 404 62.4
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.4e-144 516.2 404 62.4
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 5.2e-144 515.0 409 64.1
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.0e-143 513.1 408 63.7
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 7.6e-143 511.1 403 62.5
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 5.1e-139 498.4 351 69.5
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.6e-138 494.2 403 59.3
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 5.4e-133 478.4 405 59.8
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 8.1e-129 464.5 416 55.8
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.5e-127 458.8 405 56.8
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.5e-122 443.7 315 71.4
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 7.6e-119 431.4 359 59.9
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 7.1e-117 424.9 273 72.9
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.7e-110 403.7 273 70.0
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.3e-107 393.3 313 62.3
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 4.3e-106 389.0 410 49.0
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 9.0e-104 381.3 419 47.7
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 2.5e-101 373.2 266 71.1
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.0e-99 367.9 423 49.2
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.2e-95 354.4 412 52.4
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 6.7e-91 338.6 410 46.1
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 4.4e-82 309.3 250 66.4
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 4.7e-76 289.3 443 40.0
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 2.4e-72 276.9 176 75.6
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 8.0e-68 261.9 161 79.5
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 4.5e-63 246.1 173 74.6
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 4.2e-61 239.6 185 67.0
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.5e-61 238.4 212 56.1
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 4.0e-59 233.0 173 64.2
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.5e-58 231.1 135 82.2
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 9.5e-53 211.8 345 36.2
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 3.1e-51 206.8 112 84.8
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 4.0e-51 206.5 148 66.2
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.2e-51 206.1 159 61.6
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 5.8e-34 149.4 93 77.4
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 9.9e-34 148.7 97 70.1
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 3.5e-23 113.6 97 64.9
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 9.0e-19 99.0 70 68.6
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.2e-18 98.6 288 29.2
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 7.6e-18 95.9 82 65.9
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 8.1e-12 75.9 57 70.2


User provided reference genes

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