Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 0.0e+00 1247.3 630 100.0
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 3.2e-281 971.5 636 79.9
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.1e-276 954.9 635 78.3
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.1e-257 893.3 696 69.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.9e-217 759.6 643 67.2
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 5.5e-217 758.1 638 66.5
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 2.7e-216 755.7 638 65.5
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.8e-215 753.1 638 65.5
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 2.6e-214 749.2 640 63.6
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.8e-213 745.0 640 64.5
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.2e-211 740.3 638 65.8
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.7e-211 739.2 641 63.8
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 5.0e-210 734.9 642 63.7
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 4.2e-209 731.9 641 63.3
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.1e-204 717.2 640 61.7
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 2.7e-203 712.6 667 60.4
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.3e-202 709.5 640 63.6
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 7.2e-201 704.5 634 61.0
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 2.6e-198 696.0 636 61.0
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.4e-198 695.3 640 61.7
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.4e-196 690.3 640 60.9
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.8e-196 689.9 640 61.4
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 2.4e-196 689.5 640 60.5
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 4.1e-196 688.7 635 60.3
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.9e-195 684.9 644 60.4
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 5.9e-195 684.9 640 60.3
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.9e-194 682.2 640 59.8
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.1e-193 680.6 637 62.2
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 3.6e-192 675.6 655 58.9
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 9.8e-190 667.5 634 59.9
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 6.4e-189 664.8 645 58.1
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 8.3e-189 664.5 635 58.6
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.1e-188 664.1 636 58.3
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.1e-188 662.1 638 59.7
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 2.7e-187 659.4 637 58.1
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 3.5e-187 659.1 638 58.3
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 8.6e-186 654.4 638 59.2
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.5e-185 652.9 624 57.9
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 4.3e-185 652.1 661 57.2
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 9.5e-185 651.0 638 58.5
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 9.5e-185 651.0 643 60.2
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.6e-184 650.2 669 57.1
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 2.3e-183 646.4 644 57.5
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.5e-182 643.7 669 56.8
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 7.5e-182 641.3 672 55.1
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.2e-181 639.8 648 55.6
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 3.2e-180 636.0 649 56.4
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 7.1e-180 634.8 636 56.0
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 1.2e-179 634.0 651 57.0
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.2e-179 634.0 637 56.5
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-179 633.3 659 55.4
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.3e-178 630.6 612 58.5
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 6.2e-176 621.7 637 55.7
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.8e-175 620.2 638 55.3
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 6.8e-175 618.2 637 55.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.5e-174 617.1 636 55.2
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 3.7e-173 612.5 636 54.9
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 2.4e-172 609.8 637 55.9
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 2.5e-169 599.7 643 53.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 4.3e-169 599.0 640 55.6
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 9.6e-169 597.8 641 55.9
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 2.1e-168 596.7 641 54.9
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.1e-167 594.3 642 53.3
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.1e-167 592.8 639 54.5
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.6e-166 589.7 644 53.7
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 7.6e-166 588.2 637 54.2
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 2.1e-163 580.1 570 59.3
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 6.0e-163 578.6 634 53.0
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 7.8e-163 578.2 640 53.0
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.5e-161 573.2 507 64.5
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 7.3e-161 571.6 649 52.4
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.8e-160 568.9 650 53.4
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 8.1e-160 568.2 634 51.6
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.4e-159 567.4 610 52.6
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 2.4e-159 566.6 509 63.5
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 4.0e-159 565.8 641 52.3
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 7.6e-158 561.6 650 52.8
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 9.9e-158 561.2 638 51.6
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 2.2e-157 560.1 636 51.9
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 6.4e-157 558.5 636 52.0
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 2.4e-156 556.6 694 49.9
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 7.9e-155 551.6 609 51.9
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.1e-153 547.7 649 51.3
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.9e-153 547.0 617 52.7
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 4.8e-152 542.3 631 50.1
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 4.8e-152 542.3 648 50.9
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 8.1e-152 541.6 640 49.4
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 1.1e-151 541.2 631 49.9
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.8e-151 540.4 658 48.8
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.8e-151 540.4 636 50.5
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 9.0e-151 538.1 643 49.5
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 4.5e-150 535.8 641 49.1
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 7.6e-150 535.0 642 49.7
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 2.9e-149 533.1 648 48.5
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 3.2e-148 529.6 650 48.8
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 5.5e-148 528.9 633 49.6
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 2.7e-147 526.6 623 52.2
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.0e-146 524.6 618 51.1
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.8e-146 523.9 634 49.4
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 6.7e-146 521.9 639 52.1
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.8e-143 513.8 634 48.7
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 4.0e-143 512.7 638 48.6
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 9.0e-143 511.5 634 49.2
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.0e-142 510.4 635 49.3
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 3.4e-142 509.6 649 49.2
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.4e-142 509.6 643 47.7
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.0e-141 508.1 643 47.6
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.2e-141 506.9 636 48.6
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 4.6e-139 499.2 642 48.8
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.5e-137 494.2 634 48.3
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 7.4e-137 491.9 395 65.3
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 9.6e-137 491.5 634 48.1
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 1.6e-136 490.7 575 50.8
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.4e-135 487.6 653 45.8
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.5e-133 478.8 639 46.8
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 2.7e-131 473.4 647 45.1
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 3.5e-131 473.0 642 46.4
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.1e-129 468.0 647 44.7
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.1e-127 461.5 659 45.4
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.1e-127 459.9 622 45.0
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 4.1e-127 459.5 420 61.7
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.6e-123 447.6 615 47.2
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.1e-123 447.2 554 48.6
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 6.7e-122 442.2 634 45.1
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 3.2e-116 423.3 636 42.9
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 1.4e-114 417.9 615 44.4
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.7e-112 411.0 325 65.5
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.2e-110 404.8 639 43.3
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.1e-107 394.0 377 59.9
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.3e-104 382.5 384 58.6
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.7e-102 377.1 344 60.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 4.1e-95 353.2 398 53.5
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.0e-91 339.0 508 43.3
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.6e-89 334.0 250 66.8
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.1e-87 327.0 428 48.8
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 4.3e-84 316.6 204 77.0
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 5.6e-84 316.2 368 51.6
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 7.8e-78 295.8 597 35.8
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 4.1e-71 273.5 257 59.1
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.6e-68 263.1 684 31.6
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.9e-64 250.8 261 59.4
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 6.4e-64 249.6 250 52.4
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 9.2e-63 245.7 444 38.1
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 4.6e-62 243.4 237 53.2
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 9.5e-60 235.7 622 33.3
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.2e-57 228.8 422 35.3
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.1e-55 222.2 669 31.4
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 9.6e-52 209.1 257 52.1
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.6e-51 207.2 289 45.7
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 8.9e-50 202.6 314 41.4
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.2e-49 202.2 353 38.5
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-49 200.7 295 44.4
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.1e-46 191.4 229 50.2
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.8e-42 178.3 179 57.0
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.9e-39 168.3 203 52.7
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.8e-35 154.5 203 46.8
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.1e-34 152.5 95 80.0
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.2e-33 149.1 268 41.4
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-32 144.8 202 45.0
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.4e-32 143.3 253 43.1
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 1.4e-31 142.1 364 32.1
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 7.9e-30 136.3 128 55.5
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.5e-28 132.1 220 39.1
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 6.5e-24 116.7 89 67.4
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 4.6e-22 110.5 198 38.9
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.2e-16 91.7 95 51.6
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 5.0e-16 90.5 82 50.0
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.2e-14 85.9 262 31.7
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.1e-14 85.1 88 51.1
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 1.8e-13 82.0 286 27.3
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 2.3e-13 81.6 194 31.4
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.8e-11 73.9 68 58.8
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.7e-09 66.6 42 69.0
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.5e-07 61.6 130 35.4


User provided reference genes

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