Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.6e-191 672.5 325 100.0
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 2.7e-167 592.0 315 87.6
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 7.9e-167 590.5 318 85.8
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 3.9e-166 588.2 308 89.3
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.1e-165 586.6 320 85.3
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 1.5e-165 586.3 319 86.5
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 1.9e-165 585.9 319 85.6
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.5e-165 585.5 319 87.5
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 9.6e-165 583.6 318 86.8
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 1.3e-164 583.2 321 84.4
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.6e-164 582.8 318 84.3
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 1.6e-164 582.8 318 84.3
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.6e-164 582.8 320 84.4
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 2.1e-164 582.4 319 85.6
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 2.8e-164 582.0 317 85.2
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 6.2e-164 580.9 321 85.0
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 6.2e-164 580.9 318 84.3
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.1e-163 580.1 319 85.0
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.4e-163 579.7 318 86.8
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 1.4e-163 579.7 319 84.3
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.8e-163 579.3 319 84.3
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 2.4e-163 578.9 319 84.6
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 3.1e-163 578.6 316 85.1
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 3.1e-163 578.6 319 85.0
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 9.0e-163 577.0 321 83.8
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 4.5e-162 574.7 320 84.1
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 4.5e-162 574.7 316 84.5
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 7.6e-162 573.9 320 82.8
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.0e-161 573.5 318 84.0
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 1.7e-161 572.8 320 84.1
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 3.8e-161 571.6 320 82.5
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 4.9e-161 571.2 315 83.5
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.5e-161 570.9 315 84.1
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 6.5e-161 570.9 318 83.3
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 8.4e-161 570.5 312 85.3
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.1e-160 570.1 317 83.9
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 1.4e-160 569.7 303 87.1
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.4e-160 569.7 315 84.1
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.9e-160 569.3 318 83.6
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 2.5e-160 568.9 319 83.4
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 4.2e-160 568.2 303 88.4
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 7.1e-160 567.4 318 83.3
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 1.6e-159 566.2 305 87.5
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 2.1e-159 565.8 314 84.1
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 4.6e-159 564.7 313 84.0
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 6.0e-159 564.3 321 82.2
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 7.9e-159 563.9 315 83.2
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.8e-158 562.8 319 84.0
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.3e-158 562.4 315 82.9
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.3e-158 562.4 313 83.7
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 3.0e-158 562.0 315 82.5
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 3.0e-158 562.0 318 82.4
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 3.9e-158 561.6 320 83.8
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 6.7e-158 560.8 318 82.1
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 6.7e-158 560.8 320 81.9
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 6.7e-158 560.8 325 80.6
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 2.5e-157 558.9 318 80.8
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 4.8e-156 554.7 303 87.8
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 8.2e-156 553.9 314 82.2
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 4.1e-155 551.6 318 81.4
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 2.0e-154 549.3 303 83.8
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 5.8e-154 547.7 315 81.9
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 5.8e-154 547.7 304 83.2
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 7.6e-154 547.4 311 80.4
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 1.3e-153 546.6 299 84.6
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 1.7e-153 546.2 315 81.9
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.2e-153 545.8 312 82.4
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.5e-153 544.3 303 83.5
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 8.4e-153 543.9 300 83.0
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.1e-152 543.5 314 81.5
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.1e-152 543.5 315 81.3
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 1.4e-152 543.1 370 71.4
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.9e-152 542.7 304 83.2
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.1e-151 539.3 302 83.1
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 2.3e-150 535.8 320 78.8
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.3e-149 531.9 313 78.0
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 4.3e-149 531.6 324 79.0
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 5.9e-146 521.2 284 85.9
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 8.5e-145 517.3 297 81.1
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.4e-144 516.5 291 81.4
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 9.4e-144 513.8 320 77.2
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 6.1e-143 511.1 302 78.1
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.8e-142 509.6 308 78.6
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 3.7e-140 501.9 294 78.2
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 3.4e-138 495.4 321 69.8
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 5.9e-138 494.6 313 73.8
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 4.2e-136 488.4 319 74.6
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.6e-135 485.3 262 85.9
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.8e-134 483.0 270 83.3
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.8e-134 483.0 262 85.5
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 6.7e-134 481.1 251 86.9
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.0e-133 479.6 262 85.5
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 3.3e-133 478.8 271 82.7
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 8.2e-132 474.2 303 75.2
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 4.5e-130 468.4 285 78.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.1e-128 463.8 320 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 5.5e-128 461.5 308 70.1
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 6.7e-126 454.5 254 82.7
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.7e-119 432.6 304 71.7
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 3.4e-117 425.6 275 74.5
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 5.4e-115 418.3 258 77.9
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 5.9e-114 414.8 287 65.9
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.6e-109 399.4 234 80.3
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.4e-107 393.7 317 57.7
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 2.4e-107 392.9 218 83.9
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 8.0e-103 377.9 320 56.9
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 8.9e-102 374.4 210 82.9
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 9.2e-91 337.8 306 53.6
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 1.6e-87 327.0 326 50.6
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.2e-79 298.5 204 68.1
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.5e-77 293.9 170 82.4
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 7.6e-77 291.6 299 50.8
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 3.8e-76 289.3 288 46.9
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.8e-76 289.3 182 74.2
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 1.4e-70 270.8 145 84.8
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.7e-68 263.8 165 74.5
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 3.8e-68 262.7 170 73.5
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 3.1e-62 243.0 187 62.6
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.5e-61 239.2 132 83.3
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 3.8e-60 236.1 182 64.8
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.6e-55 220.7 125 81.6
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 3.1e-54 216.5 119 82.4
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 9.0e-54 214.9 136 71.3
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.5e-48 197.6 104 88.5
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 2.5e-48 196.8 108 83.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 6.5e-44 182.2 124 70.2
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 1.1e-40 171.4 118 66.9
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 4.1e-38 162.9 172 52.3
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.5e-37 161.0 105 68.6
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.9e-35 154.1 313 34.5
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 4.3e-32 142.9 95 75.8
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.3e-32 142.9 106 65.1
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 4.8e-31 139.4 324 33.6
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 5.5e-27 125.9 71 83.1
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 5.1e-25 119.4 119 54.6
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 5.7e-24 115.9 301 30.6
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 6.5e-20 102.4 69 68.1
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.4e-19 101.3 95 52.6
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 1.9e-19 100.9 69 68.1
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 9.1e-14 82.0 55 69.1
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.6e-13 80.5 42 88.1
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.6e-13 80.5 42 88.1
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 5.9e-13 79.3 42 85.7
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.0e-12 78.6 53 66.0
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 5.0e-12 76.3 163 29.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.0e-09 68.6 306 26.8
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 2.0e-08 64.3 81 45.7
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 7.5e-08 62.4 298 24.5
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.7e-07 61.2 298 24.2
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.7e-07 61.2 298 24.2
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 2.8e-07 60.5 51 51.0


User provided reference genes

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