Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 2.1e-236 822.0 418 100.0
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.0e-198 696.8 400 87.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.0e-178 629.4 454 72.2
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.3e-174 616.7 398 76.9
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 1.2e-172 610.1 400 77.2
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.0e-171 607.1 415 74.2
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.5e-170 603.2 402 75.1
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 5.7e-170 601.3 403 75.9
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 9.8e-170 600.5 415 73.5
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.3e-169 600.1 400 74.8
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.3e-169 597.4 398 77.1
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.6e-167 593.2 447 72.7
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.6e-167 593.2 398 75.9
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-167 593.2 398 76.4
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 2.0e-167 592.8 400 73.8
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.0e-167 592.8 423 72.8
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 7.7e-167 590.9 398 75.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.3e-166 589.3 425 73.2
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.9e-165 586.3 399 73.9
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 9.5e-165 583.9 417 70.3
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.6e-164 583.2 398 72.6
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.7e-164 581.6 399 73.4
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 2.3e-163 579.3 410 73.4
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.3e-161 573.5 413 70.5
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 3.5e-159 565.5 408 69.9
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 3.5e-159 565.5 468 63.2
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.0e-158 563.9 400 73.0
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 5.0e-158 561.6 371 77.1
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.2e-154 550.4 411 69.8
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 3.5e-151 538.9 338 80.5
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.9e-150 535.4 398 69.1
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 8.6e-150 534.3 399 67.7
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.1e-149 533.9 425 68.2
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.5e-149 533.5 400 69.0
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.5e-149 532.7 405 66.9
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 4.3e-149 531.9 401 68.3
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.3e-149 531.9 405 67.2
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 5.6e-149 531.6 410 66.3
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.8e-148 529.3 401 68.6
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 4.7e-148 528.5 405 65.9
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.1e-147 527.3 400 68.5
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.8e-147 526.6 421 66.0
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 6.8e-147 524.6 401 67.3
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.2e-146 523.9 399 68.4
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.3e-145 520.4 352 74.7
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.1e-144 517.3 406 66.0
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 4.1e-144 515.4 411 65.5
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.1e-143 513.1 401 67.3
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 3.5e-143 512.3 427 64.2
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.5e-141 506.9 405 65.4
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.6e-141 505.0 417 64.3
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.6e-140 503.4 415 64.8
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.6e-140 503.4 405 65.2
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.6e-140 502.3 402 63.9
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-139 500.7 324 79.0
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.8e-139 500.0 423 64.3
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 8.9e-139 497.7 398 64.6
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.5e-138 496.9 409 66.0
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 7.6e-138 494.6 417 63.5
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.3e-137 493.8 348 72.1
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.9e-136 490.0 435 61.6
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 4.1e-136 488.8 401 64.3
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.1e-135 486.5 418 62.2
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 7.8e-135 484.6 416 61.8
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.3e-134 483.8 401 62.8
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.0e-134 482.6 329 73.9
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.9e-133 479.9 408 61.3
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 4.3e-133 478.8 420 61.4
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 7.3e-133 478.0 395 62.5
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 7.3e-133 478.0 428 60.7
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 9.6e-133 477.6 412 61.9
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.2e-132 477.2 414 59.4
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-132 476.5 408 61.0
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-132 476.5 395 62.3
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.8e-132 476.1 390 61.5
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 8.9e-131 471.1 429 57.8
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.3e-129 467.2 432 58.3
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 4.9e-129 465.3 359 66.0
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 6.4e-129 464.9 372 66.7
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.1e-128 464.2 418 60.5
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.4e-128 463.0 418 60.3
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 4.2e-128 462.2 418 60.3
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.2e-127 460.7 419 59.7
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 4.6e-127 458.8 422 58.3
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.0e-127 458.4 369 67.8
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.0e-126 457.6 408 60.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.3e-126 456.4 428 58.9
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.5e-125 453.8 422 58.8
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 9.6e-125 451.1 404 59.9
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-124 449.9 419 58.9
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 6.2e-124 448.4 375 63.2
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 5.3e-123 445.3 357 66.4
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 2.0e-122 443.4 324 71.0
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 3.4e-122 442.6 397 60.7
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 2.2e-121 439.9 346 68.5
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.4e-121 438.3 281 79.7
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.6e-119 433.7 408 58.1
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 6.0e-119 431.8 418 58.4
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.3e-117 425.6 281 78.3
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 7.4e-117 424.9 401 58.4
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.6e-114 416.4 300 72.7
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 4.5e-114 415.6 324 67.6
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.9e-112 410.2 294 72.4
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 7.9e-111 404.8 336 65.5
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 4.9e-105 385.6 449 51.7
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.2e-103 380.9 344 61.0
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.3e-100 370.9 329 60.8
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 8.2e-100 368.2 334 60.5
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.5e-90 335.9 373 52.3
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 7.4e-77 292.0 215 68.8
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.5e-72 277.7 229 65.1
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.8e-60 236.9 127 93.7
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.8e-59 234.2 414 37.7
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 5.9e-58 229.2 408 37.7
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 9.5e-56 221.9 133 85.0
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 9.5e-56 221.9 327 42.8
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 5.9e-50 202.6 124 81.5
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.8e-46 191.0 409 32.0
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 7.3e-32 142.5 104 71.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 2.2e-28 131.0 88 75.0
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.6e-25 119.4 72 81.9
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.3e-24 117.1 92 68.5
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.6e-24 116.3 95 66.3
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 6.4e-20 102.8 113 39.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.4e-19 101.7 155 41.9
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 7.1e-19 99.4 105 50.5
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 1.0e-09 68.9 143 31.5
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 8.7e-09 65.9 105 38.1
Gohir.A11G262000 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.4e-06 58.5 107 34.6


User provided reference genes

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