Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 3.4e-95 351.7 177 100.0
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 2.1e-57 226.1 184 67.4
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 2.8e-57 225.7 184 67.4
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 4.3e-42 175.3 185 55.1
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 2.7e-36 156.0 183 50.8
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 6.6e-35 151.4 200 44.5
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 7.3e-34 147.9 177 48.6
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 4.8e-33 145.2 214 46.7
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 1.4e-32 143.7 187 44.9
FvH4_6g20110 Fragaria vesca HOM05D007532 ORTHO05D009483 5.3e-32 141.7 190 46.3
FAN14G5580 Fragaria x ananassa HOM05D007532 ORTHO05D009483 5.3e-32 141.7 190 46.3
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 9.0e-32 141.0 178 52.2
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 1.5e-31 140.2 205 41.0
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 4.5e-31 138.7 179 46.9
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 2.9e-30 136.0 189 46.6
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 1.9e-29 133.3 201 40.3
RcHm_v2.0_Chr3g0475571 Rosa chinensis HOM05D007532 ORTHO05D009483 2.4e-29 132.9 189 43.4
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 4.2e-29 132.1 197 42.1
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 7.9e-28 127.9 209 40.2
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 2.3e-27 126.3 200 41.5
FAN05G0427 Fragaria x ananassa HOM05D007532 ORTHO05D009483 3.9e-27 125.6 186 43.5
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 8.7e-27 124.4 200 41.0
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.5e-26 123.6 200 41.0
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 4.3e-26 122.1 181 41.4
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 2.1e-25 119.8 183 42.6
Gohir.D04G094900 Gossypium hirsutum HOM05D007532 ORTHO05D009483 2.1e-25 119.8 192 41.7
Gorai.009G397600 Gossypium raimondii HOM05D007532 ORTHO05D009483 2.1e-25 119.8 192 41.7
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 4.8e-25 118.6 196 42.9
Ciclev10012763m.g Citrus clementina HOM05D007532 ORTHO05D009483 9.0e-24 114.4 187 41.2
Gohir.A04G060800 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.0e-22 110.9 192 40.6
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.7e-22 110.2 200 39.5
CANSAT64G0088 Cannabis sativa HOM05D007532 ORTHO05D009483 1.1e-21 107.5 199 37.2
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 3.2e-21 105.9 204 36.8
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 1.2e-20 104.0 201 39.8
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 1.6e-20 103.6 183 37.7
Prupe.7G097300 Prunus persica HOM05D007532 ORTHO05D009483 7.9e-20 101.3 178 42.7
Sc20g0006700 Simmondsia chinensis HOM05D007532 ORTHO05D009483 1.0e-19 100.9 161 40.4
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 1.3e-19 100.5 221 36.7
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.3e-19 100.5 201 37.3
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 3.0e-19 99.4 222 36.5
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 3.0e-19 99.4 206 39.3
PSO384G2238 Papaver somniferum HOM05D007532 ORTHO05D009483 1.1e-18 97.4 209 34.0
ClCG10G018450 Citrullus lanatus HOM05D007532 ORTHO05D009483 1.5e-18 97.1 177 37.3
Actinidia04004 Actinidia chinensis HOM05D007532 ORTHO05D009483 2.5e-18 96.3 160 40.0
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 4.3e-18 95.5 178 40.4
Rhsim03G0066200 Rhododendron simsii HOM05D007532 ORTHO05D009483 5.7e-18 95.1 180 37.8
Migut.L01834 Erythranthe guttata HOM05D007532 ORTHO05D009483 7.4e-18 94.7 212 35.8
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 9.6e-18 94.4 200 35.5
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 1.3e-17 94.0 189 36.5
Medtr1g057220 Medicago truncatula HOM05D007532 ORTHO05D009483 2.8e-17 92.8 187 35.3
PSO339G0695 Papaver somniferum HOM05D007532 ORTHO05D009483 2.8e-17 92.8 208 34.1
MELO3C009524.2 Cucumis melo HOM05D007532 ORTHO05D009483 6.2e-17 91.7 185 36.8
MD14G1037100 Malus domestica HOM05D007532 ORTHO05D009483 6.2e-17 91.7 181 38.7
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 1.1e-16 90.9 208 34.6
Lalb_Chr02g0154541 Lupinus albus HOM05D007532 ORTHO05D009483 2.4e-16 89.7 186 38.2
Ca_11714_v3 Cicer arietinum L. HOM05D007532 ORTHO05D009483 6.9e-16 88.2 188 36.2
AL5G33190 Arabidopsis lyrata HOM05D007532 ORTHO05D009483 1.5e-15 87.0 202 38.6
Lj1C1049T4 Lonicera japonica HOM05D007532 ORTHO05D009483 1.5e-15 87.0 139 38.1
MBI17_g22147_MAGBIO Magnolia biondii HOM05D007532 ORTHO05D009483 2.0e-15 86.7 197 35.5
Sabra16G0072100 Salix brachista HOM05D007532 ORTHO05D009483 2.0e-15 86.7 194 35.1
Aqoxy1G00693 Aquilegia oxysepala HOM05D007532 ORTHO05D009483 2.6e-15 86.3 176 33.5
Lj5g0000288 Lotus japonicus HOM05D007532 ORTHO05D009483 3.4e-15 85.9 189 35.4
Sabra16G0073900 Salix brachista HOM05D007532 ORTHO05D009483 5.8e-15 85.1 194 36.1
A09p45610 Brassica napus HOM05D007532 ORTHO05D009483 1.0e-14 84.3 202 36.6
BcaB01g00362 Brassica carinata HOM05D007532 ORTHO05D009483 1.3e-14 84.0 203 36.9
BraA09t40022Z Brassica rapa HOM05D007532 ORTHO05D009483 1.7e-14 83.6 202 36.6
Carub.0005s1887 Capsella rubella HOM05D007532 ORTHO05D009483 1.7e-14 83.6 200 35.0
Eucgr.A02598 Eucalyptus grandis HOM05D007532 ORTHO05D009483 2.2e-14 83.2 219 30.6
Lsat_1_v5_gn_1_57140 Lactuca sativa HOM05D007532 ORTHO05D009483 2.9e-14 82.8 186 34.9
AT3G52480 Arabidopsis thaliana HOM05D007532 ORTHO05D009483 5.0e-14 82.0 203 36.5
TPR.G31864 Trifolium pratense HOM05D007532 ORTHO05D009483 5.0e-14 82.0 189 34.9
CARHR162250 Cardamine hirsuta HOM05D007532 ORTHO05D009483 8.4e-14 81.3 208 36.5
BcaC07g39613 Brassica carinata HOM05D007532 ORTHO05D009483 1.1e-13 80.9 202 36.6
BolC8t50392H Brassica oleracea HOM05D007532 ORTHO05D009483 1.1e-13 80.9 202 36.6
AUR62037048 Chenopodium quinoa HOM05D007532 ORTHO05D009483 1.1e-13 80.9 185 34.1
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 1.1e-13 80.9 194 35.6
C08p27760 Brassica napus HOM05D007532 ORTHO05D009483 1.9e-13 80.1 202 36.6
AUR62006278 Chenopodium quinoa HOM05D007532 ORTHO05D009483 1.9e-13 80.1 184 35.3
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 3.2e-13 79.3 192 33.3
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 1.2e-12 77.4 196 33.7
Thhalv10010711m.g Eutrema salsugineum HOM05D007532 ORTHO05D009483 4.6e-12 75.5 206 35.0
arahy.Tifrunner.gnm1.ann1.R0B094 Arachis hypogaea HOM05D007532 ORTHO05D009483 1.0e-11 74.3 196 33.7
arahy.Tifrunner.gnm1.ann1.U8RNVP Arachis hypogaea HOM05D007532 ORTHO05D009483 1.0e-11 74.3 196 33.7
SGA_v2.0_scaffold35G14004 Striga asiatica HOM05D007532 ORTHO05D009483 1.0e-11 74.3 149 36.9
THA.LOC104826804 Tarenaya hassleriana HOM05D014261 ORTHO05D016579 1.0e-11 74.3 188 38.3
DCAR_016921 Daucus carota HOM05D007532 ORTHO05D009483 8.7e-11 71.2 184 33.2
Lsat_1_v5_gn_2_119741 Lactuca sativa HOM05D002150 ORTHO05D002191 8.7e-11 71.2 192 31.2
CSS0034701 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 2.5e-10 69.7 196 30.1
Prupe.2G218900 Prunus persica HOM05D007532 ORTHO05D009483 4.3e-10 68.9 177 33.3
Potri.009G029300 Populus trichocarpa HOM05D002150 ORTHO05D002191 5.7e-10 68.6 193 30.1
CSS0006598 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 7.4e-10 68.2 196 29.6
HanXRQChr14g0458181 Helianthus annuus HOM05D002150 ORTHO05D002191 7.4e-10 68.2 196 31.1
Thecc.09G324000 Theobroma cacao HOM05D002150 ORTHO05D002191 7.4e-10 68.2 203 27.6
ATR0772G158 Amborella trichopoda HOM05D002150 ORTHO05D002191 2.2e-09 66.6 223 27.4
MBI05_g06551_MAGBIO Magnolia biondii HOM05D002150 ORTHO05D002191 2.2e-09 66.6 179 30.7
Sp3g09870 Schrenkiella parvula HOM05D014261 ORTHO05D016579 2.2e-09 66.6 137 38.7
Aa31LG10G7530 Aethionema arabicum HOM05D007532 ORTHO05D009483 2.8e-09 66.2 198 32.3
Glyma.10G079300 Glycine max HOM05D007532 ORTHO05D009483 2.8e-09 66.2 183 32.8
Potri.001G238300 Populus trichocarpa HOM05D002150 ORTHO05D002191 2.8e-09 66.2 192 28.6
Actinidia02955 Actinidia chinensis HOM05D002150 ORTHO05D002191 3.7e-09 65.9 194 28.9
ECA238G0408 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.8e-09 65.5 162 34.0
CSS0001235 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 8.2e-09 64.7 194 29.4
TAR369G0649 Trochodendron aralioides HOM05D002150 ORTHO05D002191 8.2e-09 64.7 195 27.2
Sp5g09820 Schrenkiella parvula HOM05D007532 ORTHO05D009483 1.4e-08 63.9 200 32.0
Nn2g14270 Nelumbo nucifera HOM05D007532 ORTHO05D009483 1.8e-08 63.5 89 42.7
Duzib128G1760 Durio zibethinus HOM05D002150 ORTHO05D002191 2.4e-08 63.2 192 29.2
Nn5g26936 Nelumbo nucifera HOM05D002150 ORTHO05D002191 2.4e-08 63.2 203 27.6
TWI15G1205 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 3.1e-08 62.8 189 29.1
Duzib150G1281 Durio zibethinus HOM05D002150 ORTHO05D002191 4.1e-08 62.4 190 27.4
Duzib168G0932 Durio zibethinus HOM05D002150 ORTHO05D002191 4.1e-08 62.4 200 27.0
PGR142G1450 Punica granatum HOM05D002150 ORTHO05D002191 4.1e-08 62.4 203 30.5
Hma1.2p1_1263F.1_g271270 Hydrangea macrophylla HOM05D002150 ORTHO05D002191 6.9e-08 61.6 198 29.3
Cc02_g08010 Coffea canephora HOM05D002150 ORTHO05D002191 9.0e-08 61.2 199 28.1
Aqoxy4G02951 Aquilegia oxysepala HOM05D002150 ORTHO05D002191 1.2e-07 60.8 202 26.2
ATR0559G086 Amborella trichopoda HOM05D002150 ORTHO05D002191 2.0e-07 60.1 200 25.5
Eucgr.G02923 Eucalyptus grandis HOM05D002150 ORTHO05D002191 2.6e-07 59.7 202 28.7
Peaxi162Scf00015g00142 Petunia axillaris HOM05D002150 ORTHO05D002191 2.6e-07 59.7 194 27.3
QL01p032435 Quercus lobata HOM05D002150 ORTHO05D002191 2.6e-07 59.7 195 29.7
Sabra09G0020400 Salix brachista HOM05D002150 ORTHO05D002191 2.6e-07 59.7 196 27.0
CiPaw.14G070000 Carya illinoinensis HOM05D002150 ORTHO05D002191 3.4e-07 59.3 188 28.7
ClCG02G020280 Citrullus lanatus HOM05D002150 ORTHO05D002191 3.4e-07 59.3 203 27.1
COL.COLO4_14995 Corchorus olitorius HOM05D002150 ORTHO05D002191 3.4e-07 59.3 186 26.3
Duzib114G0657 Durio zibethinus HOM05D002150 ORTHO05D002191 4.5e-07 58.9 192 26.0
DCAR_027636 Daucus carota HOM05D002150 ORTHO05D002191 5.9e-07 58.5 188 25.5
COL.COLO4_18490 Corchorus olitorius HOM05D002150 ORTHO05D002191 7.7e-07 58.2 198 26.8
Haze_24076 Corylus avellana HOM05D002150 ORTHO05D002191 7.7e-07 58.2 192 27.6
Dinv31446 Davidia involucrata HOM05D002150 ORTHO05D002191 7.7e-07 58.2 198 26.8
HanXRQChr08g0220401 Helianthus annuus HOM05D002150 ORTHO05D002191 1.3e-06 57.4 203 28.6
Lsat_1_v5_gn_8_15640 Lactuca sativa HOM05D002150 ORTHO05D002191 1.7e-06 57.0 195 29.2
Sed0006133 Sechium edule HOM05D002150 ORTHO05D002191 1.7e-06 57.0 194 26.3
FvH4_7g22100 Fragaria vesca HOM05D002150 ORTHO05D002191 2.2e-06 56.6 204 26.5
CAN.G1013.11 Capsicum annuum HOM05D002150 ORTHO05D002191 2.9e-06 56.2 192 27.1
FAN01G1088 Fragaria x ananassa HOM05D002150 ORTHO05D002191 2.9e-06 56.2 204 26.5
FAN06G3415 Fragaria x ananassa HOM05D002150 ORTHO05D002191 2.9e-06 56.2 204 26.5
FAN10G3914 Fragaria x ananassa HOM05D002150 ORTHO05D002191 2.9e-06 56.2 202 25.7
Thecc.10G044300 Theobroma cacao HOM05D002150 ORTHO05D002191 2.9e-06 56.2 200 25.0
AL3G23190 Arabidopsis lyrata HOM05D014261 ORTHO05D016579 3.8e-06 55.8 186 33.9
TWI38G0694 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 3.8e-06 55.8 203 28.6
ECA248G0720 Erigeron canadensis HOM05D007532 ORTHO05D009483 5.0e-06 55.5 177 29.4
FAN01G1666 Fragaria x ananassa HOM05D002150 ORTHO05D002191 5.0e-06 55.5 204 26.5
Sed0027687 Sechium edule HOM05D002150 ORTHO05D002191 5.0e-06 55.5 179 27.9
TAR623G1329 Trochodendron aralioides HOM05D002150 ORTHO05D002191 6.5e-06 55.1 188 26.1
CANSAT54G0127 Cannabis sativa HOM05D002150 ORTHO05D002191 8.5e-06 54.7 189 27.5
Carub.0003s1096 Capsella rubella HOM05D014261 ORTHO05D016579 8.5e-06 54.7 133 32.3
Prupe.6G080000 Prunus persica HOM05D002150 ORTHO05D002191 8.5e-06 54.7 200 25.5
Rhsim09G0165300 Rhododendron simsii HOM05D002150 ORTHO05D002191 8.5e-06 54.7 191 26.2


User provided reference genes

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