Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G014900 Carya illinoinensis HOM05D008222 ORTHO05D010364 0.0e+00 1248.4 680 100.0
Haze_19673 Corylus avellana HOM05D008222 ORTHO05D010364 1.8e-205 719.9 697 63.1
Cfa016663 Carpinus fangiana HOM05D008222 ORTHO05D010364 1.3e-203 713.8 698 63.5
QL07p037571 Quercus lobata HOM05D008222 ORTHO05D010364 1.1e-194 684.1 702 62.4
CiPaw.09G018200 Carya illinoinensis HOM05D008222 ORTHO05D010364 1.8e-152 543.9 576 60.2
Dinv31739 Davidia involucrata HOM05D008222 ORTHO05D010364 3.8e-147 526.2 706 51.3
Ciclev10011213m.g Citrus clementina HOM05D008222 ORTHO05D010364 5.9e-132 475.7 702 49.3
Atru.chr8.1411 Acer truncatum HOM05D008222 ORTHO05D010364 1.4e-128 464.5 749 43.8
Potri.006G205800 Populus trichocarpa HOM05D008222 ORTHO05D010364 1.5e-127 461.1 704 48.9
Thecc.05G099900 Theobroma cacao HOM05D008222 ORTHO05D010364 3.4e-127 459.9 693 45.3
COL.COLO4_29620 Corchorus olitorius HOM05D008222 ORTHO05D010364 4.4e-127 459.5 700 49.7
Manes.09G049300 Manihot esculenta HOM05D008222 ORTHO05D010364 1.8e-125 454.1 698 46.4
Sabra06G0158800 Salix brachista HOM05D008222 ORTHO05D010364 1.2e-124 451.4 701 48.9
GSVIVG01033924001 Vitis vinifera HOM05D008222 ORTHO05D010364 1.2e-124 451.4 702 45.6
TAR636G2750 Trochodendron aralioides HOM05D008222 ORTHO05D010364 5.9e-124 449.1 709 48.8
TAR633G2678 Trochodendron aralioides HOM05D008222 ORTHO05D010364 1.0e-123 448.4 715 49.2
Cpa.g.sc104.69 Carica papaya HOM05D008222 ORTHO05D010364 1.5e-119 434.5 708 47.3
CSS0016714 Camellia sinensis var. sinensis HOM05D008222 ORTHO05D010364 2.5e-114 417.2 725 45.8
Glyma.02G200000 Glycine max HOM05D008222 ORTHO05D010364 1.7e-110 404.4 700 43.3
Glyma.10G076700 Glycine max HOM05D008222 ORTHO05D010364 5.4e-109 399.4 695 44.7
TWI77G0950 Tripterygium wilfordii HOM05D008222 ORTHO05D010364 4.0e-104 383.3 712 41.2
Nn6g34773 Nelumbo nucifera HOM05D008222 ORTHO05D010364 1.2e-103 381.7 710 44.8
Lj5g0010690 Lotus japonicus HOM05D008222 ORTHO05D010364 2.0e-103 380.9 704 45.2
Lj1C1035T2 Lonicera japonica HOM05D008222 ORTHO05D010364 1.2e-100 371.7 697 41.9
FvH4_6g19810 Fragaria vesca HOM05D008222 ORTHO05D010364 6.2e-97 359.4 686 42.6
FAN14G0765 Fragaria x ananassa HOM05D008222 ORTHO05D010364 8.1e-97 359.0 686 42.6
RcHm_v2.0_Chr3g0475181 Rosa chinensis HOM05D008222 ORTHO05D010364 1.4e-96 358.2 683 43.3
FAN05G0526 Fragaria x ananassa HOM05D008222 ORTHO05D010364 1.5e-95 354.8 691 42.7
FAN02G2041 Fragaria x ananassa HOM05D008222 ORTHO05D010364 4.9e-94 349.7 687 42.6
FAN09G4126 Fragaria x ananassa HOM05D008222 ORTHO05D010364 4.1e-93 346.7 691 42.3
FAN05G0780 Fragaria x ananassa HOM05D008222 ORTHO05D010364 9.2e-93 345.5 691 42.3
CANSAT64G2035 Cannabis sativa HOM05D008222 ORTHO05D010364 1.2e-92 345.1 763 38.4
Phvul.007G270200 Phaseolus vulgaris HOM05D008222 ORTHO05D010364 2.7e-92 344.0 688 41.4
VMungo0720G0042 Vigna mungo HOM05D008222 ORTHO05D010364 5.8e-87 326.2 690 40.7
TPR.G8743 Trifolium pratense HOM05D008222 ORTHO05D010364 4.2e-85 320.1 706 37.8
Oeu060355.1 Olea europaea HOM05D008222 ORTHO05D010364 7.1e-85 319.3 687 37.0
MD12G1033800 Malus domestica HOM05D008222 ORTHO05D010364 1.9e-82 311.2 587 39.2
Oeu010753.1 Olea europaea HOM05D008222 ORTHO05D010364 4.7e-81 306.6 701 33.5
MBI17_g16777_MAGBIO Magnolia biondii HOM05D008222 ORTHO05D010364 4.4e-79 300.1 703 38.7
Oeu010756.1 Olea europaea HOM05D008222 ORTHO05D010364 1.4e-77 295.0 695 32.7
MSTRG.10386 Avicennia marina HOM05D008222 ORTHO05D010364 2.1e-76 291.2 701 33.4
Medtr1g058110 Medicago truncatula HOM05D008222 ORTHO05D010364 3.5e-76 290.4 707 40.9
DCAR_020725 Daucus carota HOM05D008222 ORTHO05D010364 4.9e-70 270.0 701 33.2
AUR62006264 Chenopodium quinoa HOM05D008222 ORTHO05D010364 2.5e-66 257.7 715 32.4
EL10Ac7g16820 Beta vulgaris HOM05D008222 ORTHO05D010364 1.4e-64 251.9 807 35.1
Hund03869 Selenicereus undatus HOM05D008222 ORTHO05D010364 1.0e-59 235.7 779 33.2
HPP92_009786 Vanilla planifolia HOM05D008222 ORTHO05D010364 6.7e-59 233.0 717 36.0
Sc20g0006580 Simmondsia chinensis HOM05D008222 ORTHO05D010364 7.4e-58 229.6 685 36.6
Aqoxy4G02694 Aquilegia oxysepala HOM05D008222 ORTHO05D010364 1.6e-57 228.4 720 36.8
AUR62028514 Chenopodium quinoa HOM05D008222 ORTHO05D010364 8.2e-57 226.1 812 33.5
Oeu010754.1 Olea europaea HOM05D008222 ORTHO05D010364 6.9e-48 196.4 529 31.0
SGA_v2.0_scaffold184G40000 Striga asiatica HOM05D008222 ORTHO05D010364 2.5e-45 188.0 684 29.4
CDE06G1815 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 3.7e-41 174.1 684 27.0
ATR0772G019 Amborella trichopoda HOM05D008222 ORTHO05D010364 9.1e-40 169.5 707 30.4
CDE08G0440 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 2.9e-38 164.5 685 30.4
Os02g0536400 Oryza sativa ssp. japonica HOM05D008222 ORTHO05D010364 3.7e-33 147.5 709 30.3
SEGI_05246 Sequoiadendron giganteum HOM05D008222 ORTHO05D010364 4.1e-32 144.1 765 29.2
unitig_8.g3557 Utricularia gibba HOM05D008222 ORTHO05D010364 1.8e-27 128.6 284 32.4
ECA233G4923 Erigeron canadensis HOM05D008222 ORTHO05D010364 1.1e-26 125.9 747 30.4
Lalb_Chr02g0154681 Lupinus albus HOM05D008222 ORTHO05D010364 2.4e-24 118.2 211 42.7
AagrBONN_evm.TU.Sc2ySwM_368.1895 Anthoceros agrestis HOM05D008222 ORTHO05D010364 2.0e-10 72.0 129 33.3
Psat6g082000 Pisum sativum HOM05D008222 ORTHO05D010364 3.4e-10 71.2 123 39.8
Nitab4.5_0000914g0130 Nicotiana tabacum HOM05D002912 ORTHO05D003191 2.3e-06 58.5 73 43.8
CARHR132250 Cardamine hirsuta HOM05D002912 ORTHO05D003191 2.9e-06 58.2 78 43.6
Carub.0004s1925 Capsella rubella HOM05D002912 ORTHO05D003191 3.8e-06 57.8 78 42.3
Migut.L01640 Erythranthe guttata HOM05D002912 ORTHO05D003191 3.8e-06 57.8 73 43.8
Gorai.012G091800 Gossypium raimondii HOM05D002912 ORTHO05D003191 3.8e-06 57.8 73 42.5
C03p24210 Brassica napus HOM05D002912 ORTHO05D003191 5.0e-06 57.4 78 42.3
BolC3t14815H Brassica oleracea HOM05D002912 ORTHO05D003191 5.0e-06 57.4 78 42.3
DCAR_017750 Daucus carota HOM05D002912 ORTHO05D003191 5.0e-06 57.4 73 43.8
Thhalv10017989m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 5.0e-06 57.4 78 42.3
FvH4_7g20711 Fragaria vesca HOM05D002912 ORTHO05D003191 5.0e-06 57.4 73 43.8
RcHm_v2.0_Chr1g0364971 Rosa chinensis HOM05D002912 ORTHO05D003191 5.0e-06 57.4 73 43.8
Sp4g19660 Schrenkiella parvula HOM05D002912 ORTHO05D003191 5.0e-06 57.4 78 42.3
Actinidia19735 Actinidia chinensis HOM05D002912 ORTHO05D003191 6.6e-06 57.0 78 41.0
Ah.10g033180 Amaranthus hybridus HOM05D002912 ORTHO05D003191 6.6e-06 57.0 73 41.1
C05p58480 Brassica napus HOM05D002912 ORTHO05D003191 6.6e-06 57.0 83 37.3
COL.COLO4_05801 Corchorus olitorius HOM05D002912 ORTHO05D003191 6.6e-06 57.0 73 43.8
Duzib106G1529 Durio zibethinus HOM05D002912 ORTHO05D003191 6.6e-06 57.0 73 43.8
Peaxi162Scf00015g00272 Petunia axillaris HOM05D002912 ORTHO05D003191 6.6e-06 57.0 73 43.8
Prupe.2G224200 Prunus persica HOM05D002912 ORTHO05D003191 6.6e-06 57.0 73 43.8
THA.LOC104806511 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 6.6e-06 57.0 79 41.8
Oeu037763.2 Olea europaea HOM05D002912 ORTHO05D003191 8.6e-06 56.6 73 43.8


User provided reference genes

Program Settings