Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.2e-28 128.3 64 100.0
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 7.7e-26 119.8 64 92.2
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.7e-23 110.5 61 86.9
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 9.2e-19 96.3 62 71.0
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.5e-18 94.4 64 67.2
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 5.9e-18 93.6 62 74.2
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 7.8e-18 93.2 62 67.7
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.0e-17 92.8 62 69.4
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.0e-17 92.8 64 68.8
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.3e-17 91.7 62 69.4
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.9e-17 90.9 62 67.7
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.9e-17 90.9 62 67.7
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.1e-16 89.4 62 66.1
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.1e-16 89.4 62 71.0
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.9e-16 88.6 64 65.6
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.3e-16 87.8 59 72.9
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.2e-15 85.9 61 67.2
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.2e-15 85.9 62 64.5
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 2.1e-15 85.1 62 59.7
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 3.6e-15 84.3 58 69.0
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 3.6e-15 84.3 58 69.0
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 6.2e-15 83.6 48 83.3
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.0e-14 82.8 58 69.0
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-14 82.8 58 67.2
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-14 82.8 58 67.2
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 1.0e-14 82.8 58 67.2
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.1e-14 81.3 61 62.3
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 8.9e-14 79.7 60 63.3
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.0e-13 78.6 53 67.9
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 2.6e-13 78.2 62 59.7
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 4.4e-13 77.4 53 67.9
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 5.8e-13 77.0 53 66.0
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 7.5e-13 76.6 58 62.1
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.3e-12 75.9 53 66.0
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 1.7e-12 75.5 53 60.4
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 1.7e-12 75.5 53 60.4
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.7e-12 75.5 58 58.6
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.7e-12 74.3 62 61.3
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 4.9e-12 73.9 53 58.5
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 4.9e-12 73.9 53 58.5
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 4.9e-12 73.9 53 58.5
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 4.9e-12 73.9 53 58.5
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 4.9e-12 73.9 53 58.5
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 8.3e-12 73.2 53 58.5
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 8.3e-12 73.2 53 58.5
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 8.3e-12 73.2 53 66.0
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 8.3e-12 73.2 53 64.2
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.1e-11 72.8 58 56.9
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.4e-11 72.4 58 60.3
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.4e-11 72.4 53 64.2
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 1.9e-11 72.0 53 56.6
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.9e-11 72.0 53 56.6
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 2.4e-11 71.6 53 58.5
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 2.4e-11 71.6 53 56.6
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 3.2e-11 71.2 53 58.5
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 3.2e-11 71.2 53 58.5
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 5.4e-11 70.5 58 60.3
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 56.6
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 56.6
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 56.6
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 56.6
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 56.6
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 7.0e-11 70.1 57 56.1
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 7.0e-11 70.1 57 54.4
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 7.0e-11 70.1 53 64.2
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 9.2e-11 69.7 57 54.4
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.2e-10 69.3 57 54.4
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.2e-10 69.3 62 53.2
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 2.0e-10 68.6 53 58.5
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 2.7e-10 68.2 53 56.6
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.7e-10 68.2 53 54.7
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 54.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 6.0e-10 67.0 57 54.4
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 54.7
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 7.8e-10 66.6 54 61.1
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 7.8e-10 66.6 53 54.7
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 1.3e-09 65.9 60 51.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 52.8
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 50.9
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 49.1
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.7e-09 65.5 54 55.6
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.3e-09 65.1 53 54.7
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.9e-09 64.3 65 47.7
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 3.9e-09 64.3 55 56.4
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 52.8
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 5.0e-09 63.9 64 46.9
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 6.6e-09 63.5 53 50.9
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 1.1e-08 62.8 47 61.7
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 49.1
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 49.1
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 4.3e-08 60.8 53 49.1
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 4.3e-08 60.8 52 50.0
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 4.3e-08 60.8 55 49.1
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 5.6e-08 60.5 53 49.1
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 9.5e-08 59.7 52 55.8
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 9.5e-08 59.7 54 50.0
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 1.2e-07 59.3 58 46.6
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 2.8e-07 58.2 50 56.0
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.8e-07 58.2 53 43.4
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.6e-07 57.8 59 44.1
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 4.7e-07 57.4 53 43.4
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 6.2e-07 57.0 42 59.5
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 6.2e-07 57.0 53 43.4
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 6.2e-07 57.0 53 43.4
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 6.2e-07 57.0 53 43.4
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 6.2e-07 57.0 53 47.2
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 6.2e-07 57.0 46 54.3
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 6.2e-07 57.0 53 49.1
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.4e-06 55.8 53 43.4
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 2.3e-06 55.1 53 43.4
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 4.0e-06 54.3 58 41.4
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 6.8e-06 53.5 44 61.4
Lsat_1_v5_gn_1_58000 Lactuca sativa HOM05D006095 ORTHO05D001225 8.9e-06 53.1 45 60.0
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 8.9e-06 53.1 53 45.3


User provided reference genes

Program Settings