Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.7e-28 128.6 64 100.0
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.0e-25 119.4 64 92.2
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 7.5e-21 103.2 61 80.3
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 3.9e-17 90.9 64 67.2
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 5.0e-17 90.5 64 64.1
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 8.6e-17 89.7 62 64.5
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.5e-16 89.0 62 64.5
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.5e-16 89.0 62 64.5
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.3e-16 87.8 62 64.5
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.6e-16 87.0 62 62.9
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 5.6e-16 87.0 62 62.9
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 9.5e-16 86.3 62 67.7
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.6e-15 85.5 62 61.3
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 2.8e-15 84.7 64 62.5
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.8e-14 82.0 62 59.7
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 2.3e-14 81.6 62 64.5
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 4.0e-14 80.9 59 67.8
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.0e-13 78.6 61 60.7
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 2.6e-13 78.2 62 54.8
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 4.4e-13 77.4 48 77.1
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 5.8e-13 77.0 58 62.1
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 5.8e-13 77.0 58 62.1
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.7e-12 75.5 58 62.1
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 1.7e-12 75.5 58 60.3
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 1.7e-12 75.5 58 60.3
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 1.7e-12 75.5 58 60.3
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 4.9e-12 73.9 61 55.7
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.4e-11 72.4 60 56.7
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.9e-11 72.0 53 62.3
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 4.1e-11 70.9 53 62.3
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 56.6
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 56.6
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 5.4e-11 70.5 53 60.4
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 5.4e-11 70.5 62 53.2
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.2e-10 69.3 58 55.2
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.2e-10 69.3 53 60.4
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 54.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 54.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 54.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 54.7
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.6e-10 68.9 58 53.4
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 2.7e-10 68.2 53 54.7
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 2.7e-10 68.2 53 54.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 3.5e-10 67.8 53 60.4
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 3.5e-10 67.8 58 56.9
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 4.6e-10 67.4 53 52.8
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 6.0e-10 67.0 62 54.8
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 52.8
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 6.0e-10 67.0 53 52.8
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 7.8e-10 66.6 53 54.7
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 7.8e-10 66.6 53 52.8
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 7.8e-10 66.6 53 60.4
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 54.7
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 58.5
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 54.7
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 1.7e-09 65.5 61 54.1
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.7e-09 65.5 58 51.7
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 54.7
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 5.0e-09 63.9 57 50.9
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.0e-09 63.9 57 49.1
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.6e-09 63.5 57 49.1
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 6.6e-09 63.5 53 58.5
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 6.6e-09 63.5 63 49.2
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 8.6e-09 63.2 57 49.1
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.1e-08 62.8 53 52.8
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 1.5e-08 62.4 59 54.2
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.5e-08 62.4 57 50.9
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.9e-08 62.0 53 52.8
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.9e-08 62.0 64 45.3
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.9e-08 62.0 62 46.8
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 1.9e-08 62.0 60 46.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 50.9
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 49.1
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 47.2
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 5.6e-08 60.5 53 49.1
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 7.3e-08 60.1 53 49.1
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 9.5e-08 59.7 53 49.1
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.2e-07 59.3 65 44.6
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 1.2e-07 59.3 55 52.7
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 49.1
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 4.7e-07 57.4 53 47.2
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 4.7e-07 57.4 58 44.8
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 6.2e-07 57.0 52 48.1
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 6.2e-07 57.0 53 45.3
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 6.2e-07 57.0 55 43.6
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 8.1e-07 56.6 53 45.3
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 8.1e-07 56.6 47 55.3
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.1e-06 56.2 53 47.2
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.1e-06 56.2 59 42.4
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 4.0e-06 54.3 48 54.2
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 4.0e-06 54.3 53 43.4
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 5.2e-06 53.9 53 41.5
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 5.2e-06 53.9 53 41.5


User provided reference genes

Program Settings