Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 5.6e-311 1070.1 550 100.0
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.8e-164 582.8 528 64.2
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 1.4e-160 570.5 552 60.3
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 3.8e-153 545.8 565 58.9
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 4.3e-149 532.3 549 58.5
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 3.8e-129 466.1 535 52.9
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 2.3e-118 430.3 527 50.3
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 4.1e-115 419.5 569 48.0
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 2.6e-114 416.8 527 50.1
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 1.0e-113 414.8 527 49.3
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 2.9e-113 413.3 527 49.5
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.1e-112 411.4 527 48.8
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 7.2e-112 408.7 532 50.4
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.2e-111 407.9 537 48.2
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.6e-111 407.5 555 47.9
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 3.7e-108 396.4 544 48.3
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.3e-108 395.6 586 45.4
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 1.6e-103 380.9 551 45.9
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.4e-99 367.9 526 46.6
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 3.1e-99 366.7 536 45.9
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.1e-96 358.2 542 44.6
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 1.5e-96 357.8 510 46.3
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 7.2e-96 355.5 550 44.0
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 1.2e-90 338.2 562 44.1
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 1.7e-89 334.3 556 42.4
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 7.5e-85 318.9 527 41.6
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 5.4e-83 312.8 629 39.6
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 5.4e-83 312.8 396 49.0
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 4.7e-79 299.7 614 39.3
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 2.2e-76 290.8 393 47.8
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 4.1e-75 286.6 556 41.4
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 2.7e-74 283.9 584 38.7
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 3.9e-73 280.0 394 48.0
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 2.5e-72 277.3 590 41.4
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.3e-72 276.9 587 41.2
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 5.6e-72 276.2 546 38.8
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 9.5e-72 275.4 392 45.7
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 6.1e-71 272.7 544 38.8
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 8.9e-70 268.9 549 38.4
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 2.2e-68 264.2 568 40.3
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 1.9e-67 261.2 570 38.6
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 9.2e-67 258.8 533 38.8
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 2.7e-66 257.3 542 36.7
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 3.5e-66 256.9 519 38.9
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 2.3e-65 254.2 538 40.0
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 2.3e-65 254.2 540 37.4
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 3.0e-65 253.8 538 40.0
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 9.5e-64 248.8 559 37.2
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 1.6e-63 248.1 521 37.4
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 1.6e-63 248.1 523 38.0
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 4.7e-63 246.5 538 38.8
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 8.0e-63 245.7 522 37.5
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 1.1e-62 245.4 520 37.9
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 4.0e-62 243.4 524 37.4
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 2.6e-61 240.7 555 35.1
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 2.2e-60 237.7 367 44.7
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 3.7e-60 236.9 540 37.4
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 5.4e-59 233.0 546 35.7
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 2.7e-58 230.7 531 36.0
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 2.7e-58 230.7 527 36.8
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 3.9e-57 226.9 552 37.0
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 5.1e-57 226.5 533 36.8
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 5.2e-54 216.5 560 36.2
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 4.4e-53 213.4 367 39.8
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 1.1e-51 208.8 395 38.2
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 2.1e-50 204.5 387 39.5
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 3.5e-50 203.8 391 40.4
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 3.5e-50 203.8 510 33.9
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 1.0e-49 202.2 558 33.5
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 8.6e-49 199.1 373 38.6
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 8.6e-49 199.1 347 44.1
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 5.6e-48 196.4 390 37.7
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 9.5e-48 195.7 539 33.8
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.4e-46 191.0 317 38.8
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 4.4e-45 186.8 422 35.8
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 4.9e-44 183.3 428 34.3
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 8.4e-44 182.6 394 36.5
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 1.1e-40 172.2 396 35.6
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 2.1e-39 167.9 394 34.8
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 3.1e-38 164.1 356 36.5
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 4.0e-38 163.7 388 34.5
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 4.0e-38 163.7 388 34.5
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 6.9e-38 162.9 396 35.1
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.0e-37 161.4 386 36.3
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 3.4e-37 160.6 375 31.7
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 3.4e-37 160.6 234 47.0
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 3.4e-37 160.6 394 34.5
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 2.4e-35 154.5 332 35.5
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 4.2e-35 153.7 524 29.4
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 5.4e-35 153.3 404 35.9
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 3.5e-34 150.6 407 35.6
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 5.1e-33 146.7 401 35.4
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.6e-31 141.7 390 33.8
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 2.1e-31 141.4 392 33.4
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 7.6e-29 132.9 279 39.8
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 9.9e-29 132.5 364 35.2
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 2.4e-27 127.9 361 33.5
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 1.8e-25 121.7 140 50.0
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 8.1e-23 112.8 358 31.6
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 1.8e-22 111.7 140 47.9
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 2.4e-22 111.3 334 31.1
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 3.1e-22 110.9 330 30.3
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 4.5e-21 107.1 268 38.4
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 1.3e-20 105.5 368 29.6
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 1.3e-20 105.5 368 31.2
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 2.2e-20 104.8 415 27.0
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 4.9e-20 103.6 339 31.9
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 2.5e-19 101.3 126 54.0
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 3.0e-17 94.4 175 38.9
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 8.7e-17 92.8 191 39.8
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 1.1e-16 92.4 265 30.2
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 3.3e-16 90.9 175 38.9
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.1e-15 88.2 198 38.9
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 6.2e-15 86.7 81 58.0
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 1.1e-14 85.9 124 45.2
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 4.0e-14 84.0 390 27.9
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 2.0e-13 81.6 184 38.0
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 2.6e-13 81.3 90 51.1
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 7.6e-13 79.7 193 31.6
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 3.8e-12 77.4 140 42.1
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 2.5e-11 74.7 79 54.4
Actinidia02438 Actinidia chinensis HOM05D005512 ORTHO05D006716 5.5e-11 73.6 220 31.8
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 2.3e-09 68.2 57 63.2
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 1.9e-08 65.1 129 40.3
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 6.3e-07 60.1 78 46.2
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 3.1e-06 57.8 91 49.5


User provided reference genes

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