Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.8e-48 194.1 95 100.0
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.1e-23 113.2 98 64.3
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.2e-22 109.8 94 60.6
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 4.8e-16 87.8 90 54.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.1e-15 86.7 86 57.0
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 3.5e-14 81.6 91 51.6
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 3.5e-14 81.6 90 53.3
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.0e-13 80.1 90 48.9
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.3e-13 79.7 100 47.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.3e-13 79.7 87 55.2
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-13 79.7 92 51.1
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.7e-13 79.3 90 50.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.0e-13 77.8 93 41.9
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 5.0e-13 77.8 91 49.5
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.5e-13 77.4 81 50.6
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.1e-12 76.6 92 48.9
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.9e-12 75.9 91 46.2
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.9e-12 75.9 86 50.0
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.2e-12 74.7 92 48.9
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 5.5e-12 74.3 96 47.9
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.5e-12 74.3 99 48.5
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 7.2e-12 73.9 88 43.2
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 9.5e-12 73.6 89 47.2
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 9.5e-12 73.6 90 46.7
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-11 73.2 87 47.1
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.2e-11 73.2 90 46.7
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.1e-11 72.4 84 46.4
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.1e-11 72.4 84 46.4
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.1e-11 72.4 84 46.4
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.1e-11 72.4 69 53.6
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-11 72.0 50 66.0
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-11 72.0 50 66.0
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-11 72.0 93 47.3
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.8e-11 72.0 87 47.1
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 3.6e-11 71.6 85 49.4
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.6e-11 71.6 82 45.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 4.7e-11 71.2 87 46.0
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.7e-11 71.2 87 46.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 4.7e-11 71.2 92 42.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.7e-11 71.2 98 44.9
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 6.1e-11 70.9 85 47.1
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.0e-10 70.1 91 47.3
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.0e-10 70.1 87 46.0
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.0e-10 70.1 99 48.5
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.0e-10 70.1 92 42.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-10 69.7 95 42.1
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.4e-10 69.7 87 43.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.4e-10 69.7 82 48.8
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.4e-10 69.7 84 44.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.8e-10 69.3 89 41.6
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.8e-10 69.3 50 64.0
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-10 69.3 50 64.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.8e-10 69.3 86 46.5
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 88 43.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 92 46.7
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.8e-10 69.3 92 44.6
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 2.3e-10 68.9 81 50.6
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.0e-10 68.6 83 43.4
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.0e-10 68.6 87 35.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.0e-10 68.6 84 44.0
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 3.0e-10 68.6 92 40.2
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.0e-10 68.6 82 48.8
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.0e-10 68.2 91 41.8
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 4.0e-10 68.2 88 42.0
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.0e-10 68.2 84 42.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.0e-10 68.2 89 46.1
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 5.2e-10 67.8 88 46.6
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.2e-10 67.8 84 45.2
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.2e-10 67.8 82 50.0
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.8e-10 67.4 86 43.0
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.8e-10 67.4 84 44.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 8.8e-10 67.0 90 35.6
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.8e-10 67.0 68 51.5
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-09 66.6 92 44.6
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.2e-09 66.6 94 44.7
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.2e-09 66.6 92 45.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-09 66.6 97 44.3
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.2e-09 66.6 52 61.5
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.2e-09 66.6 92 46.7
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.2e-09 66.6 65 50.8
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.5e-09 66.2 93 41.9
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 87 44.8
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 89 41.6
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-09 65.9 84 40.5
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.0e-09 65.9 84 44.0
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-09 65.5 40 72.5
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-09 65.5 84 42.9
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.4e-09 65.1 94 45.7
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.4e-09 65.1 98 39.8
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.4e-09 65.1 95 38.9
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.4e-09 64.7 83 37.3
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 4.4e-09 64.7 86 45.3
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 4.4e-09 64.7 54 55.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 4.4e-09 64.7 85 42.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.7e-09 64.3 91 40.7
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 5.7e-09 64.3 92 45.7
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 5.7e-09 64.3 92 38.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 7.5e-09 63.9 55 58.2
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.5e-09 63.9 97 42.3
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 9.8e-09 63.5 89 43.8
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 9.8e-09 63.5 85 42.4
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 9.8e-09 63.5 89 43.8
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.8e-09 63.5 91 40.7
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-08 63.2 83 45.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-08 63.2 83 45.8
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 93 39.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.3e-08 63.2 93 39.8
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.3e-08 63.2 89 40.4
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 89 40.4
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.3e-08 63.2 41 70.7
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.3e-08 63.2 86 37.2
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.3e-08 63.2 92 44.6
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.7e-08 62.8 43 62.8
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.7e-08 62.8 96 39.6
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.7e-08 62.8 77 46.8
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.7e-08 62.8 64 53.1
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.7e-08 62.8 88 43.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.2e-08 62.4 82 47.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.2e-08 62.4 82 39.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.8e-08 62.0 41 68.3
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-08 62.0 36 75.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 3.7e-08 61.6 96 39.6
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.7e-08 61.6 89 41.6
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.9e-08 61.2 87 37.9
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.9e-08 61.2 83 41.0
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.9e-08 61.2 83 41.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 6.3e-08 60.8 91 39.6
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 6.3e-08 60.8 91 39.6
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 6.3e-08 60.8 84 41.7
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 8.3e-08 60.5 92 40.2
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.1e-07 60.1 87 37.9
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.4e-07 59.7 92 38.0
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.8e-07 59.3 84 45.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.4e-07 58.9 86 39.5
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.4e-07 58.9 41 63.4
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.4e-07 58.9 51 58.8
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 4.1e-07 58.2 98 39.8
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.4e-07 57.8 45 57.8
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 5.4e-07 57.8 43 55.8
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 9.2e-07 57.0 86 34.9
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.2e-07 57.0 81 39.5
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.2e-06 56.6 50 52.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.6e-06 56.2 87 37.9
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 1.6e-06 56.2 88 37.5
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.6e-06 56.2 39 64.1
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.6e-06 56.2 86 38.4
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.0e-06 55.8 38 63.2
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 2.7e-06 55.5 88 39.8
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.7e-06 55.5 96 38.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 3.5e-06 55.1 81 35.8
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 3.5e-06 55.1 86 34.9
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 3.5e-06 55.1 86 34.9
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.5e-06 55.1 88 38.6
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 4.5e-06 54.7 38 63.2
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.5e-06 54.7 55 41.8
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.9e-06 54.3 83 34.9
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 5.9e-06 54.3 36 69.4
EL10Ac7g16989 Beta vulgaris HOM05D040036 ORTHO05D004215 5.9e-06 54.3 90 42.2
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 5.9e-06 54.3 41 56.1
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.9e-06 54.3 37 59.5
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 7.8e-06 53.9 44 50.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 7.8e-06 53.9 44 50.0


User provided reference genes

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