Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 9.8e-253 876.3 444 100.0
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 9.0e-190 667.2 517 68.7
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 4.5e-181 638.3 440 70.9
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 1.7e-180 636.3 442 70.8
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 3.8e-180 635.2 438 70.1
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.5e-179 632.5 438 70.8
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 5.5e-179 631.3 437 71.2
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 7.2e-179 630.9 444 72.7
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.1e-178 629.4 438 70.5
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 2.6e-176 622.5 442 68.3
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 3.3e-176 622.1 442 69.9
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.4e-174 616.7 442 68.3
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.2e-173 613.6 451 68.1
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.2e-173 613.6 438 68.9
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.6e-173 612.5 451 68.1
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.2e-172 609.4 435 69.2
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.5e-172 607.4 468 66.2
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 1.4e-171 606.7 443 68.6
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.4e-171 606.7 435 69.2
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 5.5e-171 604.7 443 68.4
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 5.5e-171 604.7 436 67.9
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 8.0e-170 600.9 436 68.1
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 1.8e-169 599.7 421 70.3
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.0e-169 599.0 438 67.1
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 3.0e-169 599.0 438 67.1
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 3.9e-169 598.6 436 68.6
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 3.3e-168 595.5 442 68.3
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 9.7e-168 594.0 436 68.3
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 4.8e-167 591.7 438 67.4
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.3e-167 591.3 468 64.7
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 8.2e-167 590.9 442 67.6
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 8.2e-167 590.9 436 67.0
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.8e-166 589.7 441 66.0
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 4.1e-166 588.6 370 81.4
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 7.0e-166 587.8 442 67.4
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 1.2e-165 587.0 434 66.6
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 1.3e-164 583.6 445 64.9
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 5.5e-163 578.2 441 64.9
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 9.4e-163 577.4 440 65.9
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 2.1e-162 576.2 551 55.0
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 8.8e-161 570.9 382 73.0
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.5e-160 570.1 488 59.6
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 4.4e-160 568.5 440 65.2
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 5.7e-160 568.2 440 63.6
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 4.8e-159 565.1 436 63.3
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 3.1e-158 562.4 438 62.6
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 4.5e-157 558.5 432 67.4
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 4.5e-157 558.5 436 61.7
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 4.5e-157 558.5 467 60.8
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 5.9e-157 558.1 386 72.0
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 5.9e-157 558.1 441 64.9
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 2.2e-156 556.2 434 62.0
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.1e-155 553.9 439 62.2
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.1e-155 553.9 439 62.2
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 3.2e-155 552.4 440 62.0
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.6e-154 550.1 436 62.6
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 2.1e-154 549.7 439 62.0
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 6.1e-154 548.1 439 62.4
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 8.0e-154 547.7 434 62.4
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 1.0e-153 547.4 437 61.3
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.8e-153 546.6 437 62.7
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 3.0e-153 545.8 361 72.3
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 4.0e-153 545.4 439 61.7
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 6.8e-153 544.7 458 59.6
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 1.5e-152 543.5 435 61.4
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 4.4e-152 542.0 470 58.7
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 9.8e-152 540.8 440 61.4
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 4.8e-151 538.5 382 70.2
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.2e-149 533.9 440 60.2
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 1.2e-149 533.9 390 67.4
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 6.6e-148 528.1 467 56.5
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 4.2e-147 525.4 430 60.0
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 4.0e-145 518.8 446 59.0
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 2.6e-144 516.2 567 50.8
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 2.6e-144 516.2 384 65.9
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.0e-140 504.2 467 56.5
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 5.0e-140 501.9 413 61.7
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.3e-135 487.3 436 57.3
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 3.7e-135 485.7 434 56.7
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 1.9e-134 483.4 429 57.6
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 9.5e-131 471.1 323 71.8
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 3.4e-128 462.6 318 71.7
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 6.0e-125 451.8 408 58.1
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 6.0e-125 451.8 323 70.9
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 7.8e-125 451.4 456 54.4
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.6e-122 443.7 425 54.4
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 6.0e-117 425.2 393 54.7
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 8.9e-113 411.4 431 50.3
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 2.6e-112 409.8 430 48.6
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 4.2e-110 402.5 287 67.6
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 7.1e-110 401.7 280 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.6e-109 400.6 426 48.1
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.2e-102 375.9 288 63.5
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 5.1e-100 369.0 313 59.7
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.1e-97 359.8 251 70.1
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 4.0e-97 359.4 432 44.7
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 1.5e-83 314.3 361 46.5
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 4.0e-81 306.2 288 56.2
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 9.7e-59 231.9 182 63.2
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.0e-56 224.2 286 46.2
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 1.7e-55 221.1 152 72.4
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 6.5e-55 219.2 195 54.4
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 9.7e-51 205.3 155 67.1
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.4e-49 200.7 332 39.2
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.6e-48 197.2 305 40.3
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.7e-47 194.5 131 74.8
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.5e-46 191.4 149 69.1
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.7e-42 177.9 147 63.9
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 1.8e-41 174.5 126 68.3
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.1e-38 165.2 200 45.0
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.3e-36 157.5 136 61.8
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 9.5e-30 135.6 98 60.2
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.2e-29 135.2 98 68.4
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 1.6e-29 134.8 97 58.8
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 4.0e-28 130.2 93 64.5
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 9.2e-25 119.0 384 27.6
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 1.5e-19 101.7 167 35.9
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 1.8e-12 78.2 59 57.6
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 5.2e-12 76.6 63 52.4
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 8.3e-10 69.3 71 46.5
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.2e-09 65.9 68 44.1
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 2.1e-08 64.7 68 47.1
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 2.1e-08 64.7 68 47.1
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 1.7e-07 61.6 50 54.0


User provided reference genes

Program Settings