Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 4.9e-112 409.1 486 100.0
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.7e-16 91.7 240 52.5
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 2.5e-15 87.8 91 57.1
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 1.6e-14 85.1 107 54.2
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 1.0e-13 82.4 109 52.3
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 1.8e-13 81.6 108 50.9
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 6.7e-13 79.7 104 50.0
SGA_v2.0_scaffold118G32589 Striga asiatica HOM05D011389 ORTHO05D006108 8.8e-13 79.3 126 43.7
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 2.0e-12 78.2 123 46.3
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 2.0e-12 78.2 93 54.8
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 3.3e-12 77.4 90 56.7
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.5e-12 76.3 105 49.5
Migut.C01359 Erythranthe guttata HOM05D011389 ORTHO05D006108 9.7e-12 75.9 122 42.6
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 9.7e-12 75.9 120 47.5
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.3e-11 75.5 105 48.6
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 1.7e-11 75.1 105 48.6
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 2.8e-11 74.3 84 54.8
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.8e-11 74.3 105 48.6
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.8e-11 74.3 105 48.6
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 3.7e-11 73.9 130 41.5
PGR142G2869 Punica granatum HOM05D011389 ORTHO05D006108 3.7e-11 73.9 124 42.7
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.8e-11 73.6 105 48.6
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.4e-10 72.0 94 51.1
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 1.4e-10 72.0 93 53.8
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 2.4e-10 71.2 93 54.8
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 2.4e-10 71.2 130 49.2
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 7.0e-10 69.7 97 49.5
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 9.1e-10 69.3 95 51.6
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 2.0e-09 68.2 99 49.5
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 2.0e-09 68.2 89 48.3
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 2.7e-09 67.8 90 46.7
Medtr7g103280 Medicago truncatula HOM05D013121 ORTHO05D015407 2.7e-09 67.8 124 41.1
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 4.5e-09 67.0 93 45.2
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 4.5e-09 67.0 105 43.8
TPR.G31495 Trifolium pratense HOM05D013121 ORTHO05D015407 4.5e-09 67.0 125 38.4
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 5.9e-09 66.6 109 43.1
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 7.7e-09 66.2 90 44.4
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 7.7e-09 66.2 96 45.8
Psat3g037480 Pisum sativum HOM05D013121 ORTHO05D015407 7.7e-09 66.2 119 41.2
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 1.0e-08 65.9 96 47.9
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 1.0e-08 65.9 115 40.0
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 1.0e-08 65.9 96 45.8
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 1.0e-08 65.9 96 45.8
Cfa016502 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.0e-08 65.9 90 50.0
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 1.0e-08 65.9 103 49.5
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 1.0e-08 65.9 98 40.8
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 1.3e-08 65.5 97 46.4
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 1.3e-08 65.5 93 46.2
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 1.3e-08 65.5 90 44.4
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 1.3e-08 65.5 101 40.6
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 1.7e-08 65.1 93 46.2
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 1.7e-08 65.1 92 45.7
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 1.7e-08 65.1 90 45.6
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 2.2e-08 64.7 96 47.9
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 2.2e-08 64.7 96 44.8
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 2.2e-08 64.7 96 44.8
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.2e-08 64.7 101 48.5
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 2.9e-08 64.3 89 49.4
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 3.8e-08 63.9 98 48.0
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 3.8e-08 63.9 41 73.2
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 3.8e-08 63.9 129 38.0
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 6.5e-08 63.2 90 42.2
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 8.5e-08 62.8 87 50.6
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 1.1e-07 62.4 91 39.6
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 1.5e-07 62.0 94 45.7
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 1.5e-07 62.0 94 45.7
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 1.5e-07 62.0 100 41.0
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 1.9e-07 61.6 94 44.7
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.9e-07 61.6 101 47.5
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 2.5e-07 61.2 109 46.8
Lalb_Chr01g0018471 Lupinus albus HOM05D013121 ORTHO05D015407 3.2e-07 60.8 113 39.8
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 4.2e-07 60.5 91 40.7
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 4.2e-07 60.5 133 41.4
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 4.2e-07 60.5 86 51.2
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 5.5e-07 60.1 41 68.3
Solyc11g042800.2 Solanum lycopersicum HOM05D011389 ORTHO05D006108 5.5e-07 60.1 128 35.9
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 7.2e-07 59.7 96 44.8
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 7.2e-07 59.7 72 48.6
Nitab4.5_0011622g0020 Nicotiana tabacum HOM05D011389 ORTHO05D006108 9.4e-07 59.3 75 49.3
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 9.4e-07 59.3 95 44.2
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 1.2e-06 58.9 92 47.8
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 1.6e-06 58.5 102 44.1
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 1.6e-06 58.5 81 49.4
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.1e-06 58.2 104 47.1
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 2.1e-06 58.2 45 66.7
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 2.1e-06 58.2 107 40.2
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 2.1e-06 58.2 110 49.1
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 2.7e-06 57.8 104 49.0
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 2.7e-06 57.8 92 46.7
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 3.6e-06 57.4 95 38.9
Sopen11g019160 Solanum pennellii HOM05D011389 ORTHO05D006108 3.6e-06 57.4 128 35.2
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 4.7e-06 57.0 99 44.4
SGA_v2.0_scaffold277G46722 Striga asiatica HOM05D006485 ORTHO05D006108 8.0e-06 56.2 82 41.5
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 8.0e-06 56.2 86 43.0


User provided reference genes

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