Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 5.6e-175 617.5 304 100.0
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.5e-119 433.3 304 72.4
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 7.7e-116 421.0 310 69.0
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.5e-111 406.8 308 70.8
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.6e-89 333.6 265 64.5
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.6e-79 299.7 314 56.4
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.4e-77 293.9 322 54.7
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 7.3e-74 281.6 310 52.6
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.8e-72 276.9 315 53.3
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 3.1e-72 276.2 318 51.9
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 3.1e-72 276.2 310 53.9
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 4.4e-71 272.3 327 52.3
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 4.4e-71 272.3 327 52.3
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 8.4e-70 268.1 311 48.6
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.1e-69 267.7 311 53.4
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 4.2e-69 265.8 316 52.8
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.2e-69 265.8 327 50.8
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 2.3e-67 260.0 308 49.0
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 5.6e-66 255.4 317 48.9
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 7.3e-66 255.0 310 50.6
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 2.1e-65 253.4 314 49.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 3.6e-65 252.7 311 50.2
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.1e-64 251.1 316 49.4
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 4.0e-64 249.2 326 48.5
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 9.0e-64 248.1 313 49.2
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.6e-63 246.5 317 49.2
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 7.6e-63 245.0 313 48.9
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 9.9e-63 244.6 333 48.3
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 9.9e-63 244.6 311 50.2
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 2.1e-60 236.9 312 50.0
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 3.5e-60 236.1 314 49.4
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.0e-59 234.6 306 46.1
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.3e-59 234.2 314 44.3
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.6e-59 231.9 270 48.9
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.1e-58 231.1 313 47.3
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 1.5e-58 230.7 319 47.3
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.9e-58 230.3 308 47.4
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.5e-58 229.9 306 47.7
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 4.3e-58 229.2 275 50.9
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 1.6e-57 227.3 306 46.7
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.8e-57 226.5 310 45.5
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 3.1e-56 223.0 315 44.1
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 5.3e-56 222.2 313 49.2
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 1.2e-55 221.1 302 47.4
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 4.5e-55 219.2 304 47.0
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 9.9e-55 218.0 311 47.9
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.2e-54 216.9 307 45.3
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 2.9e-54 216.5 312 46.2
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 6.4e-54 215.3 315 44.1
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.4e-53 214.2 312 43.9
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.4e-53 213.4 332 44.6
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 2.4e-53 213.4 312 47.4
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 7.1e-53 211.8 276 47.1
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 7.1e-53 211.8 314 42.7
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 2.1e-52 210.3 307 40.7
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 4.6e-52 209.1 314 44.6
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 7.9e-52 208.4 315 43.2
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 7.9e-52 208.4 332 44.6
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 7.9e-52 208.4 304 46.1
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.0e-51 208.0 308 45.5
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.0e-51 208.0 320 42.8
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.8e-51 207.2 312 43.6
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.8e-51 207.2 305 44.9
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 2.3e-51 206.8 312 45.2
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.3e-51 206.8 311 43.7
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 8.7e-51 204.9 307 41.4
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 2.5e-50 203.4 307 43.0
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 7.4e-50 201.8 309 43.4
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.6e-49 200.7 336 43.8
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.1e-49 200.3 306 42.8
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 8.1e-49 198.4 315 42.9
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.4e-48 197.6 303 42.9
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 4.0e-48 196.1 311 43.1
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 9.0e-48 194.9 316 40.8
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.2e-47 194.5 316 38.6
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.2e-47 194.5 307 44.0
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.2e-47 194.5 307 45.9
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 2.6e-47 193.4 327 44.3
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.5e-47 192.6 306 45.1
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 4.5e-47 192.6 307 43.6
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 7.6e-47 191.8 336 42.3
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 4.9e-46 189.1 308 40.3
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 1.4e-45 187.6 303 41.3
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 3.2e-45 186.4 307 43.0
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 4.2e-45 186.0 311 41.5
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 7.1e-45 185.3 311 41.8
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 7.1e-45 185.3 310 43.9
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.3e-43 181.0 335 41.2
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 3.9e-43 179.5 306 39.2
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 6.7e-43 178.7 305 40.0
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.5e-42 177.6 319 37.9
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.5e-42 177.6 266 41.7
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.5e-42 176.8 219 50.2
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 2.5e-42 176.8 303 39.9
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.3e-42 176.0 307 38.4
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 7.4e-42 175.3 271 42.1
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 9.6e-42 174.9 319 37.6
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 6.2e-41 172.2 302 38.4
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.4e-40 171.0 319 37.3
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 5.3e-40 169.1 243 46.1
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 9.0e-40 168.3 319 37.3
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 1.0e-38 164.9 313 38.3
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.0e-38 162.5 313 38.3
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 8.4e-38 161.8 271 41.0
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.2e-37 159.8 292 39.4
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 4.6e-36 156.0 304 36.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 3.0e-35 153.3 314 37.6
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 8.7e-35 151.8 186 49.5
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.1e-34 151.4 304 38.2
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 4.3e-34 149.4 302 34.4
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.3e-34 149.4 299 38.1
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 5.7e-34 149.1 310 35.5
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.8e-33 146.7 309 34.6
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 3.7e-33 146.4 308 36.4
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 4.8e-33 146.0 312 34.3
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 2.4e-32 143.7 314 35.0
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 2.4e-32 143.7 314 35.0
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 2.4e-32 143.7 314 35.0
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 2.4e-32 143.7 314 35.0
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.4e-32 143.7 319 36.4
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.1e-32 142.9 313 35.5
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 6.9e-32 142.1 307 35.2
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.2e-31 141.4 312 34.6
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.5e-31 141.0 310 35.2
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.6e-31 140.2 312 32.7
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.6e-31 140.2 308 32.8
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 4.5e-31 139.4 319 36.4
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 5.9e-31 139.0 311 34.7
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 5.9e-31 139.0 302 36.8
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 7.7e-31 138.7 322 35.7
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 7.7e-31 138.7 311 34.7
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.0e-30 138.3 308 32.8
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-30 137.9 309 34.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.7e-30 137.5 319 34.5
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.7e-30 137.5 299 36.1
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-30 137.1 315 33.7
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.2e-30 137.1 302 36.4
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.0e-30 136.0 199 40.2
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 6.5e-30 135.6 312 34.6
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 6.5e-30 135.6 312 34.6
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 6.5e-30 135.6 316 34.5
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 6.5e-30 135.6 300 34.3
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.1e-29 134.8 311 35.0
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.5e-29 133.7 311 35.0
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 4.2e-29 132.9 317 34.1
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 4.2e-29 132.9 317 34.4
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 4.2e-29 132.9 312 34.9
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 5.5e-29 132.5 317 34.1
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 5.5e-29 132.5 311 33.4
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 7.2e-29 132.1 311 33.4
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-28 131.3 312 34.0
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 1.2e-28 131.3 304 32.6
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.2e-28 131.3 294 34.7
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 6.1e-28 129.0 308 32.1
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 6.1e-28 129.0 308 32.1
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.9e-27 126.3 307 33.2
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 6.7e-27 125.6 275 35.6
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 8.8e-27 125.2 310 34.5
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.5e-26 124.4 309 32.4
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.5e-26 124.4 271 35.1
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 3.3e-26 123.2 324 31.8
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.3e-26 122.9 190 45.3
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 8.2e-25 118.6 310 33.5
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 2.4e-24 117.1 270 34.1
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 4.1e-24 116.3 308 31.8
TAR633G2325 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.9e-24 115.5 157 47.8
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.5e-23 114.4 306 29.7
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 5.9e-23 112.5 147 46.3
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-22 110.5 183 38.3
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.9e-22 110.2 321 32.1
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 2.9e-22 110.2 101 53.5
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 6.5e-22 109.0 318 29.6
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 4.2e-21 106.3 137 46.7
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 1.6e-20 104.4 201 37.3
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 2.6e-18 97.1 88 54.5
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 7.4e-18 95.5 294 31.6
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.7e-17 94.4 277 33.2
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 3.1e-16 90.1 148 38.5
unitig_0.g211 Utricularia gibba HOM05D003715 ORTHO05D003958 1.3e-14 84.7 187 31.0
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 6.5e-14 82.4 96 46.9
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 2.5e-13 80.5 311 29.3
FAN28G1691 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.5e-13 79.3 161 37.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 7.2e-13 79.0 70 60.0
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.6e-10 70.5 94 43.6
VMungo1164G0001 Vigna mungo HOM05D003715 ORTHO05D003958 4.8e-09 66.2 73 47.9
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 2.4e-08 63.9 104 38.5
Zm00001eb160920 Zea mays HOM05D015210 ORTHO05D003958 2.9e-06 57.0 71 45.1


User provided reference genes

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