Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 1.4e-206 722.6 349 100.0
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 1.9e-166 589.3 350 82.9
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 2.5e-163 578.9 350 80.9
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 5.7e-163 577.8 350 80.9
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 6.3e-154 547.7 349 76.8
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 3.0e-148 528.9 345 74.2
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 7.7e-144 514.2 339 72.6
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 6.5e-143 511.1 347 71.2
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 7.2e-142 507.7 340 72.4
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.2e-141 506.9 342 72.5
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 2.1e-141 506.1 343 70.6
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 2.7e-141 505.8 346 69.7
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 2.7e-141 505.8 339 71.7
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 3.6e-141 505.4 343 70.8
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 4.7e-141 505.0 346 69.7
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.0e-140 503.8 349 70.5
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 1.4e-140 503.4 342 70.8
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 2.3e-140 502.7 346 69.7
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 2.3e-140 502.7 347 70.0
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 1.2e-139 500.4 342 72.2
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 1.5e-139 500.0 342 70.8
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 2.0e-139 499.6 347 69.2
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 3.3e-139 498.8 345 69.9
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 3.3e-139 498.8 341 70.1
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 1.3e-138 496.9 338 70.1
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 1.7e-138 496.5 343 68.2
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 2.2e-138 496.1 345 69.9
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 2.2e-138 496.1 344 70.9
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 2.2e-138 496.1 348 70.4
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 1.4e-137 493.4 344 68.9
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 1.4e-137 493.4 346 71.1
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 4.1e-137 491.9 340 69.4
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 9.1e-137 490.7 344 68.3
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 1.6e-136 490.0 347 68.9
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 2.7e-136 489.2 344 68.0
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 5.9e-136 488.0 340 69.4
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 1.0e-135 487.3 342 65.8
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 1.0e-135 487.3 342 65.8
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 1.0e-135 487.3 353 65.4
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 2.9e-135 485.7 345 68.4
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 2.9e-135 485.7 341 67.7
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 6.5e-135 484.6 342 65.8
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 6.5e-135 484.6 340 66.5
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 6.5e-135 484.6 342 67.0
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 8.5e-135 484.2 350 66.6
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 1.1e-134 483.8 342 65.5
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 1.5e-134 483.4 343 66.8
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 2.5e-134 482.6 340 67.9
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 4.2e-134 481.9 342 65.8
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 9.4e-134 480.7 343 65.3
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 1.2e-133 480.3 338 67.8
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 1.2e-133 480.3 351 66.4
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 1.6e-133 479.9 342 66.1
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 2.7e-133 479.2 337 68.5
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 4.7e-133 478.4 342 65.8
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 1.4e-132 476.9 389 60.4
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 1.8e-132 476.5 344 67.2
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.8e-132 476.5 341 67.7
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 2.3e-132 476.1 339 66.4
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 4.0e-132 475.3 342 67.8
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 5.2e-132 474.9 338 65.4
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 8.8e-132 474.2 341 67.4
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 8.8e-132 474.2 341 68.0
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 1.2e-131 473.8 344 66.0
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 3.4e-131 472.2 348 66.4
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 3.4e-131 472.2 339 67.3
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 5.7e-131 471.5 342 65.5
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 9.8e-131 470.7 340 66.2
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.3e-130 470.3 344 65.4
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 1.7e-130 469.9 338 66.3
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 1.4e-129 466.8 342 63.7
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 1.4e-129 466.8 338 68.0
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-129 466.8 338 67.5
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.1e-129 465.7 338 67.8
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 9.1e-129 464.2 338 64.2
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 1.6e-128 463.4 339 66.7
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 7.7e-128 461.1 347 63.7
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.7e-127 459.9 338 66.6
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.2e-127 459.5 338 67.2
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 5.5e-126 454.9 376 60.4
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 5.5e-126 454.9 341 64.2
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.2e-125 453.8 338 66.0
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.3e-124 449.5 341 66.3
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 6.8e-124 448.0 339 63.7
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.2e-123 447.2 339 64.6
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 2.6e-123 446.0 350 61.4
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 8.3e-122 441.0 374 59.6
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 8.3e-122 441.0 335 61.8
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 1.4e-121 440.3 343 61.8
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 5.9e-120 434.9 336 61.6
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 3.8e-119 432.2 336 62.5
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 5.0e-119 431.8 338 61.8
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 1.9e-118 429.9 347 60.8
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 9.5e-118 427.6 344 64.0
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 1.8e-116 423.3 336 59.2
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 1.2e-115 420.6 350 56.6
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 3.4e-115 419.1 345 60.3
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 5.7e-115 418.3 336 58.9
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 1.7e-114 416.8 291 70.8
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 3.7e-114 415.6 338 60.1
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 6.4e-114 414.8 342 61.1
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 1.0e-108 397.5 435 48.3
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 2.4e-105 386.3 265 70.6
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 1.2e-104 384.0 353 55.2
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 1.2e-104 384.0 338 56.5
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.7e-98 362.5 291 63.6
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 6.4e-98 361.7 347 50.7
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 2.5e-94 349.7 263 63.9
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 1.2e-93 347.4 263 63.9
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 7.3e-86 321.6 238 63.0
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.3e-79 300.8 184 76.1
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 2.3e-79 300.1 182 76.4
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 3.1e-76 289.7 343 44.3
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.6e-67 260.0 342 38.3
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.7e-64 250.0 210 61.0
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 2.7e-64 250.0 342 39.5
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 7.4e-54 215.3 179 63.1
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.6e-48 197.6 204 52.5
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 4.6e-48 196.1 168 61.9
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 3.7e-45 186.4 192 52.1
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 8.5e-42 175.3 259 35.9
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 7.2e-41 172.2 182 52.2
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-36 157.9 222 42.3
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 2.6e-27 127.1 81 70.4
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 6.3e-21 105.9 131 38.2
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 1.5e-17 94.7 129 36.4
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.4e-15 88.2 60 68.3
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.4e-15 88.2 60 68.3
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.4e-15 88.2 60 68.3
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 1.2e-14 85.1 60 66.7
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 4.1e-12 76.6 83 49.4
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.4e-12 76.3 104 43.3
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 9.1e-12 75.5 83 49.4
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.6e-11 74.7 83 48.2
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.7e-11 73.9 59 61.0
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.5e-11 73.6 53 64.2
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.5e-11 73.6 53 64.2
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.2e-08 65.1 63 52.4
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 4.0e-07 60.1 69 46.4


User provided reference genes

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