Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 0.0e+00 1587.4 829 100.0
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 0.0e+00 1170.2 888 74.3
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 0.0e+00 1125.9 789 79.0
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 0.0e+00 1125.9 789 79.0
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 0.0e+00 1082.4 853 70.7
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 4.0e-308 1061.2 898 66.8
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 2.9e-306 1055.0 899 66.7
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 4.9e-306 1054.3 857 70.8
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 1.1e-305 1053.1 902 66.6
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 1.6e-301 1039.3 900 66.4
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 8.1e-301 1036.9 901 65.4
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 1.4e-297 1026.2 902 66.2
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.9e-295 1018.1 902 64.5
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 1.1e-292 1010.0 901 65.1
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 4.5e-291 1004.6 900 64.3
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.9e-290 1001.9 902 63.3
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 1.4e-289 999.6 899 64.8
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.2e-289 998.0 902 63.1
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 7.4e-286 987.3 902 63.4
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 1.4e-284 983.0 901 63.3
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.2e-283 979.9 901 63.3
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 1.7e-282 976.1 904 62.1
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 1.8e-279 966.1 902 62.5
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.4e-276 956.4 892 63.7
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.0e-274 948.0 908 60.5
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 5.5e-273 944.5 901 62.5
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 7.2e-273 944.1 908 60.5
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 1.8e-271 939.5 898 62.1
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 5.7e-270 934.5 911 60.3
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.6e-269 932.9 903 60.8
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.6e-269 932.9 903 60.9
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 2.9e-266 922.2 913 58.7
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.0e-266 921.4 901 60.3
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 8.5e-266 920.6 910 60.8
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.1e-265 920.2 908 59.6
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.5e-265 917.9 908 59.5
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 3.6e-264 915.2 910 60.4
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.0e-263 913.7 890 59.6
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.0e-263 912.1 901 60.6
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.0e-262 909.4 894 61.2
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 9.7e-262 907.1 906 59.5
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 5.9e-259 897.9 910 59.1
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 3.8e-258 895.2 911 58.5
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 5.0e-258 894.8 911 58.4
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.9e-257 892.9 899 58.6
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 1.9e-257 892.9 895 58.2
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 3.6e-256 888.6 898 60.1
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.0e-255 885.6 907 58.4
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 8.8e-255 884.0 912 58.8
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 8.2e-253 877.5 893 59.5
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.1e-252 877.1 889 60.7
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.4e-252 876.7 896 59.8
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 7.0e-252 874.4 742 68.2
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 9.1e-252 874.0 910 58.9
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.2e-251 873.6 889 60.5
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.6e-251 873.2 890 60.8
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.6e-251 873.2 889 60.4
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 3.5e-251 872.1 910 58.8
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 3.2e-249 865.5 910 57.7
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 2.6e-246 855.9 898 57.6
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 2.2e-245 852.8 889 57.5
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.8e-244 849.7 900 58.4
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 2.4e-244 849.4 898 57.8
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 3.1e-244 849.0 880 57.5
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 7.0e-244 847.8 905 57.8
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 2.7e-243 845.9 778 64.9
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 5.9e-243 844.7 896 57.0
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 5.9e-243 844.7 887 56.6
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 2.9e-242 842.4 894 57.2
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 4.2e-241 838.6 898 56.3
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 3.6e-240 835.5 902 55.2
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 1.2e-238 830.5 864 58.4
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.6e-238 829.3 899 57.6
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.3e-237 827.0 855 58.5
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 8.3e-237 824.3 897 57.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 2.7e-235 819.3 892 54.4
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 2.9e-234 815.8 894 56.0
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 3.8e-234 815.5 897 56.4
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 5.0e-234 815.1 827 58.8
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.0e-234 815.1 772 61.0
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.8e-231 806.6 915 54.9
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 2.5e-225 786.2 898 56.1
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 6.1e-224 781.6 854 55.0
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 3.0e-223 779.2 896 53.0
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 6.8e-223 778.1 899 52.8
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 6.6e-218 761.5 911 52.6
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 5.6e-217 758.4 864 55.7
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 6.2e-216 755.0 898 54.3
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 1.3e-213 747.3 723 62.2
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.7e-213 746.9 899 51.4
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 2.8e-208 729.6 906 51.5
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 2.0e-206 723.4 902 52.8
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 3.7e-205 719.2 837 53.6
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 6.4e-205 718.4 900 52.8
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 1.2e-203 714.1 858 52.9
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 4.6e-203 712.2 906 49.1
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.1e-201 707.6 898 50.6
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 7.3e-201 704.9 901 49.8
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 7.3e-201 704.9 885 51.9
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.1e-199 701.0 754 57.6
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.4e-199 700.7 857 52.6
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 5.8e-198 695.3 788 55.6
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.3e-194 684.1 897 50.8
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 1.2e-192 677.6 827 53.9
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.6e-190 669.8 822 53.4
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 5.8e-190 668.7 906 50.6
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 7.6e-190 668.3 822 53.3
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 2.9e-189 666.4 892 50.9
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.4e-188 664.1 760 56.3
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.1e-185 654.4 865 50.5
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.5e-185 653.3 894 47.9
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 5.6e-185 652.1 894 49.0
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 9.6e-185 651.4 891 49.6
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.1e-184 650.2 901 46.8
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 4.0e-183 646.0 787 54.0
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.4e-181 638.6 781 53.6
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 3.2e-180 636.3 892 48.0
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-179 634.4 782 52.4
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 2.7e-179 633.3 817 52.0
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.7e-179 633.3 862 50.5
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 3.3e-177 626.3 787 51.0
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.1e-175 621.3 852 49.1
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 1.8e-175 620.5 910 46.8
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.3e-173 614.4 818 49.8
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 3.2e-172 609.8 893 47.3
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 3.0e-170 603.2 815 50.2
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 3.0e-170 603.2 786 48.1
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 3.1e-167 593.2 839 49.0
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 7.6e-166 588.6 901 46.9
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 2.5e-164 583.6 831 46.5
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 6.0e-163 578.9 901 46.7
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 7.4e-161 572.0 929 45.4
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 2.8e-160 570.1 868 46.1
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 9.0e-159 565.1 825 48.7
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 7.2e-156 555.4 868 46.1
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.2e-155 554.7 858 46.7
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 4.6e-155 552.7 869 45.9
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.3e-154 550.4 890 44.9
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 6.7e-154 548.9 869 45.5
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 5.7e-153 545.8 859 45.8
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 1.5e-150 537.7 886 44.8
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 3.2e-148 530.0 908 44.2
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 5.1e-146 522.7 905 42.8
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.6e-145 520.4 768 47.5
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 5.3e-143 512.7 741 48.9
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 1.5e-142 511.1 909 43.8
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 3.4e-142 510.0 912 43.5
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 2.2e-128 464.2 641 51.8
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 8.6e-117 425.6 738 43.6
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 9.8e-105 385.6 897 37.7
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 1.8e-103 381.3 911 37.0
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 1.7e-101 374.8 802 40.5
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 2.9e-96 357.5 458 49.3
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.6e-91 341.7 309 57.9
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 3.1e-90 337.4 816 39.6
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 3.2e-87 327.4 344 59.0
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 1.2e-86 325.5 917 36.2
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 1.6e-86 325.1 927 36.4
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 2.1e-83 314.7 915 35.2
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 2.1e-78 298.1 810 37.4
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.6e-75 287.3 905 32.6
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.1e-74 284.3 911 34.6
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.6e-73 281.2 906 34.3
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.4e-73 280.8 897 31.8
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 3.4e-73 280.8 357 46.8
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.5e-68 265.4 265 73.6
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.1e-66 259.2 428 46.0
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 4.2e-63 247.3 504 39.5
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 7.9e-54 216.5 322 43.5
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 8.7e-53 213.0 1008 29.8
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 3.3e-52 211.1 935 30.3
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 5.5e-47 193.7 247 47.8
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 9.7e-44 183.0 289 41.2
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 6.7e-37 160.2 380 36.1
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.3e-36 157.5 262 40.1
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.4e-33 147.9 297 34.7
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.9e-31 142.1 359 33.7
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 7.2e-23 113.6 529 26.8
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.1e-20 106.3 149 47.0
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.4e-20 103.6 672 25.1
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.2e-15 87.0 90 47.8
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.3e-12 78.2 104 44.2


User provided reference genes

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