Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 3.1e-105 385.2 202 100.0
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 2.0e-83 312.8 200 79.5
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.4e-68 263.5 198 68.2
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 7.5e-67 257.7 198 65.7
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 6.4e-66 254.6 202 61.4
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.4e-65 252.7 200 61.0
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.6e-64 250.0 198 64.6
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.3e-63 246.9 200 59.5
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.3e-63 246.9 202 61.9
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.5e-62 240.7 200 59.5
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 9.5e-62 240.7 198 60.6
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.2e-61 240.4 200 60.0
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 6.2e-61 238.0 198 58.1
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.8e-60 236.5 198 62.1
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.3e-60 236.1 199 59.3
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.2e-59 233.8 202 57.9
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.0e-59 233.0 198 59.1
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 7.5e-59 231.1 197 57.9
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 9.8e-59 230.7 199 59.8
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-58 229.9 200 57.5
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.2e-58 229.6 200 56.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.9e-58 229.2 200 57.5
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 6.4e-58 228.0 199 57.3
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.3e-58 227.6 198 55.6
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.1e-57 227.3 198 55.6
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.1e-57 227.3 198 55.6
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.4e-57 226.9 202 56.9
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.9e-57 226.5 198 55.1
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 7.1e-57 224.6 199 55.3
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 1.6e-56 223.4 202 55.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-56 223.4 198 54.5
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.7e-56 222.6 200 56.0
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 6.0e-56 221.5 200 52.0
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.3e-55 220.3 190 58.9
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 5.1e-55 218.4 198 55.6
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 8.1e-53 211.1 191 56.0
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.1e-52 210.7 201 52.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.1e-52 209.1 198 51.0
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 5.2e-52 208.4 201 52.2
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.2e-51 207.2 198 51.5
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.3e-50 203.8 199 52.3
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 2.9e-50 202.6 196 52.6
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 1.9e-49 199.9 199 52.8
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 4.1e-49 198.7 184 52.7
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 5.4e-49 198.4 198 48.5
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.3e-47 193.7 198 48.0
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.3e-47 193.7 199 47.2
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 5.1e-47 191.8 213 47.4
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.9e-46 189.9 202 46.0
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.9e-46 189.9 198 51.5
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.6e-45 185.7 202 45.0
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 5.2e-44 181.8 202 45.5
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 5.2e-44 181.8 195 49.2
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.2e-43 180.6 194 47.4
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.6e-43 179.5 198 47.0
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 8.4e-42 174.5 270 37.8
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 6.0e-40 168.3 107 80.4
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.5e-38 163.7 202 39.6
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 5.6e-38 161.8 194 47.4
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 7.3e-38 161.4 197 42.1
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 7.3e-38 161.4 107 77.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 1.8e-36 156.8 202 40.1
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 1.8e-36 156.8 202 40.1
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 9.0e-36 154.5 202 39.1
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 4.4e-35 152.1 199 38.2
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.3e-34 150.6 202 39.6
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.4e-33 147.1 197 41.6
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 2.7e-32 142.9 198 41.4
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 3.5e-32 142.5 186 43.5
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 1.7e-31 140.2 198 36.9
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.3e-31 139.8 198 39.4
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 5.1e-31 138.7 198 40.9
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 9.6e-30 134.4 198 38.9
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 2.1e-29 133.3 107 60.7
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 2.8e-29 132.9 107 60.7
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 6.2e-29 131.7 92 69.6
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 6.2e-29 131.7 148 50.7
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.1e-28 131.0 196 35.2
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 3.1e-28 129.4 107 63.6
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 2.0e-27 126.7 141 48.9
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 3.4e-27 125.9 107 58.9
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.8e-27 125.2 107 56.1
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 9.9e-27 124.4 198 38.4
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 1.3e-26 124.0 163 44.2
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.3e-26 124.0 107 56.1
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 3.8e-26 122.5 107 56.1
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.4e-25 120.6 107 57.0
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.4e-25 119.8 81 72.8
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.2e-25 119.4 107 57.0
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 3.2e-25 119.4 107 56.1
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 2.1e-24 116.7 113 53.1
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.1e-24 116.7 159 39.6
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.7e-24 116.3 107 56.1
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.5e-24 115.9 107 56.1
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 6.0e-24 115.2 128 52.3
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 3.9e-23 112.5 187 35.8
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.9e-23 112.5 86 62.8
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 5.1e-23 112.1 107 53.3
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 6.7e-23 111.7 108 51.9
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.5e-22 109.8 107 53.3
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.3e-22 109.0 107 53.3
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 9.6e-22 107.8 107 48.6
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 9.6e-22 107.8 107 54.2
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 2.1e-21 106.7 107 50.5
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 3.7e-21 105.9 86 57.0
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 9.0e-20 101.3 100 53.0
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 1.5e-19 100.5 165 36.4
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.6e-19 99.8 128 46.1
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.0e-18 97.8 79 59.5
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-18 97.4 79 59.5
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.7e-18 97.1 93 47.3
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 4.9e-18 95.5 184 32.1
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.5e-18 95.1 79 58.2
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.1e-17 94.4 106 46.2
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 1.1e-17 94.4 87 54.0
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 3.2e-17 92.8 82 50.0
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 3.2e-17 92.8 57 71.9
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.2e-16 90.9 82 48.8
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 2.1e-16 90.1 92 45.7
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.7e-16 89.7 86 53.5
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 3.5e-16 89.4 107 42.1
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 4.6e-16 89.0 69 53.6
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.3e-15 87.4 85 44.7
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-15 86.3 126 37.3
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-15 86.3 126 37.3
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 3.0e-15 86.3 108 45.4
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 3.0e-15 86.3 196 27.6
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.7e-15 85.1 57 66.7
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 8.7e-15 84.7 55 69.1
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 2.5e-14 83.2 56 58.9
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 3.3e-14 82.8 61 57.4
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 1.3e-13 80.9 55 58.2
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.6e-13 80.5 73 56.2
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 1.6e-13 80.5 66 59.1
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 2.8e-13 79.7 63 54.0
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 6.2e-13 78.6 100 42.0
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 1.1e-12 77.8 101 45.5
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 5.3e-12 75.5 56 64.3
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 9.0e-12 74.7 102 42.2
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 9.0e-12 74.7 100 42.0
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 9.0e-12 74.7 51 66.7
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 9.0e-12 74.7 51 66.7
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 1.2e-11 74.3 102 42.2
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.5e-11 73.9 100 43.0
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.5e-11 73.9 55 65.5
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 2.6e-11 73.2 100 42.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 1.7e-10 70.5 100 42.0
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.8e-10 69.3 107 34.6
Ca_07678_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.9e-09 67.0 61 54.1
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.2e-09 66.2 105 36.2
TPR.G18966 Trifolium pratense HOM05D004264 ORTHO05D004680 9.3e-09 64.7 61 55.7
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 6.1e-08 62.0 107 29.9
AagrBONN_evm.TU.Sc2ySwM_344.2603 Anthoceros agrestis HOM05D004264 ORTHO05D004680 6.7e-07 58.5 206 23.3
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 9.7e-06 54.7 70 45.7
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 9.7e-06 54.7 144 29.9


User provided reference genes

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