Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1893.6 968 100.0
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1669.4 1009 83.8
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1567.0 1012 78.4
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1555.0 1010 77.5
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1551.6 1012 77.7
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1544.3 1013 77.6
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1543.5 1012 78.1
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1531.2 1012 76.9
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1530.8 1012 77.0
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1530.8 1010 77.3
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1530.8 1012 77.0
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1527.7 912 85.0
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1523.8 1010 76.5
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1515.7 1010 75.9
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1515.4 1010 75.9
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1513.4 1012 75.9
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1496.5 1012 75.5
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1494.2 1015 75.2
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1490.7 1015 75.7
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1490.7 1015 75.7
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1490.7 1012 75.7
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1486.5 1012 75.3
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1479.9 1012 75.1
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1479.9 1030 76.9
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1477.6 1010 75.1
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1475.3 1014 74.5
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1475.3 1012 74.6
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1474.9 1041 72.6
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1470.3 1012 73.5
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1469.1 1012 73.1
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1468.4 1012 74.5
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1466.4 1012 74.0
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1462.6 1012 72.5
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1460.7 1012 72.7
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1459.9 1010 74.5
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1458.4 1013 72.6
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1458.4 1010 73.3
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1456.4 1012 73.8
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1455.3 1013 72.4
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1454.5 1012 72.4
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1454.1 1010 73.9
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1452.6 1012 72.4
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1452.6 1012 72.0
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1451.0 1012 72.2
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1449.5 1012 72.2
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1449.1 1008 72.4
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1449.1 1012 71.4
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1448.3 1013 72.0
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1448.3 1014 73.0
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1444.9 1012 72.4
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1442.9 1013 71.8
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1439.5 1010 71.7
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1434.9 1012 71.2
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1434.1 1017 72.1
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1432.2 1012 72.8
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1429.8 1012 73.5
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1408.7 1071 67.8
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1407.9 1010 71.3
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1406.7 1079 67.5
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1397.9 1017 70.8
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1395.9 1008 70.2
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1395.9 1008 70.4
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1393.3 1017 71.2
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1391.7 1010 70.4
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1390.9 1016 71.9
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1389.8 1010 70.5
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1384.0 1017 70.7
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1382.5 1008 70.1
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1381.3 1008 69.2
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1376.7 1011 68.2
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1376.3 998 70.5
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1375.9 1016 69.3
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1375.5 1041 67.1
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1371.7 1092 67.5
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1368.2 1010 68.9
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1365.1 912 75.4
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1364.7 1008 68.2
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1360.1 1146 62.9
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1357.0 1012 70.2
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1355.9 1024 67.7
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1350.9 1010 68.8
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1349.7 992 70.2
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1315.1 1069 63.8
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1308.1 1010 67.6
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1280.4 997 66.4
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1268.8 1013 65.4
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1255.0 897 71.2
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1225.3 933 66.7
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1223.0 1002 64.4
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1207.6 1017 61.5
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1204.1 1016 60.1
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1189.9 1016 61.1
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1185.2 836 70.9
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1088.2 1015 57.0
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1084.3 880 65.8
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 3.6e-308 1061.6 964 57.2
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 7.0e-296 1020.8 611 80.9
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.1e-288 996.9 611 79.7
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 2.8e-284 982.2 821 63.1
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.9e-277 959.5 882 54.9
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 5.2e-267 924.9 714 66.8
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 4.2e-264 915.2 617 74.2
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 7.1e-264 914.4 1021 46.6
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 9.3e-256 887.5 690 66.4
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 4.6e-255 885.2 1019 46.2
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 6.2e-252 874.8 1024 46.0
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 2.8e-244 849.4 537 78.8
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.2e-242 844.0 509 82.7
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 4.6e-239 832.0 507 81.1
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 3.0e-238 829.3 508 80.5
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 5.7e-229 798.5 992 44.3
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 4.7e-215 752.3 1034 40.6
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.4e-198 697.6 504 72.4
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.0e-189 667.2 1023 38.6
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.5e-168 597.8 974 39.6
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.2e-154 551.6 487 64.1
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.8e-142 511.1 546 52.9
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 4.6e-138 496.5 394 69.5
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 1.8e-129 468.0 409 59.9
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 3.3e-128 463.8 347 67.4
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 8.7e-121 439.1 312 72.1
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.2e-114 418.7 404 55.4
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 1.6e-114 418.3 425 56.7
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 6.7e-113 412.9 304 70.4
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 4.3e-112 410.2 1047 30.3
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 7.9e-106 389.4 281 73.7
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 9.1e-94 349.4 358 56.1
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.0e-89 335.9 1169 25.9
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.7e-84 318.5 232 71.6
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 2.2e-84 318.2 303 53.1
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 1.8e-70 271.9 213 62.9
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 1.2e-69 269.2 216 67.6
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.1e-62 246.1 141 85.1
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 2.3e-52 211.8 177 60.5
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-50 203.8 314 35.7
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 4.6e-45 187.6 126 78.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 4.3e-43 181.0 129 69.8
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 5.6e-43 180.6 135 71.9
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 1.9e-30 139.0 193 40.4
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 2.4e-30 138.7 179 46.4
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 5.4e-30 137.5 88 73.9
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 2.3e-28 132.1 79 83.5
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 1.5e-27 129.4 92 70.7
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 9.0e-25 120.2 78 78.2
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 6.4e-23 114.0 91 59.3
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 1.0e-20 106.7 76 61.8
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 8.1e-18 97.1 59 76.3
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.4e-17 96.3 123 43.1
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 3.1e-17 95.1 57 77.2
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 5.8e-16 90.9 77 57.1
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 5.5e-14 84.3 45 84.4
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-13 82.4 98 43.9
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 2.7e-13 82.0 47 85.1
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 9.6e-11 73.6 47 78.7
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 4.8e-10 71.2 125 35.2
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 8.2e-10 70.5 125 36.0
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 1.1e-09 70.1 125 34.4
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.1e-09 70.1 125 36.0
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 4.0e-09 68.2 121 33.9
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 6.9e-09 67.4 172 29.7
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 3.4e-08 65.1 135 30.4
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 5.8e-08 64.3 130 33.1
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 3.8e-07 61.6 173 26.6
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 6.5e-07 60.8 167 27.5
HPP92_013646 Vanilla planifolia HOM05D002786 ORTHO05D003493 8.4e-07 60.5 220 26.8
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 1.1e-06 60.1 142 26.8
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 1.1e-06 60.1 142 26.8
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 1.1e-06 60.1 128 33.6
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 1.1e-06 60.1 128 33.6
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 1.1e-06 60.1 128 33.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.1e-06 60.1 59 57.6
TPR.G2948 Trifolium pratense HOM05D002786 ORTHO05D003493 1.4e-06 59.7 219 25.1
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 1.9e-06 59.3 140 27.9
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 4.2e-06 58.2 137 30.7
Ca_07104_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 7.1e-06 57.4 176 26.1
Ca_07106_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 7.1e-06 57.4 176 26.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 7.1e-06 57.4 44 56.8
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 9.3e-06 57.0 137 27.0


User provided reference genes

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