Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 9.0e-44 179.9 91 100.0
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.8e-18 94.7 80 67.5
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-17 92.8 83 60.2
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-17 92.8 83 60.2
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 9.3e-17 90.1 90 54.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 6.1e-16 87.4 84 57.1
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 6.1e-16 87.4 80 56.2
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 7.9e-16 87.0 85 57.6
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 7.9e-16 87.0 84 60.7
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 7.9e-16 87.0 81 58.0
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.9e-16 87.0 80 55.0
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 7.9e-16 87.0 80 55.0
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.0e-15 86.7 80 55.0
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 3.0e-15 85.1 81 55.6
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 3.9e-15 84.7 81 55.6
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 3.9e-15 84.7 80 58.8
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.1e-15 84.3 82 58.5
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.1e-15 84.3 82 58.5
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.1e-14 83.2 75 60.0
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.1e-14 83.2 76 57.9
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 7.4e-14 80.5 81 55.6
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 9.7e-14 80.1 80 55.0
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.7e-14 80.1 84 52.4
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.3e-13 79.7 84 48.8
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.7e-13 79.3 80 52.5
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.2e-13 79.0 82 54.9
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.2e-13 79.0 84 52.4
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 3.7e-13 78.2 83 53.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 3.7e-13 78.2 79 54.4
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 4.8e-13 77.8 84 51.2
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 4.8e-13 77.8 75 53.3
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.3e-13 77.4 82 57.3
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 6.3e-13 77.4 78 53.8
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-12 76.6 85 57.6
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.8e-12 75.9 84 50.0
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.4e-12 75.5 81 50.6
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.1e-12 75.1 86 53.5
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 3.1e-12 75.1 66 59.1
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 4.1e-12 74.7 57 61.4
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 4.1e-12 74.7 57 61.4
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.1e-12 74.7 83 51.8
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 6.9e-12 73.9 86 53.5
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 6.9e-12 73.9 83 51.8
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.1e-12 73.6 84 53.6
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 9.1e-12 73.6 83 53.0
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 2.0e-11 72.4 83 50.6
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.0e-11 72.4 83 50.6
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.0e-11 72.4 83 50.6
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 2.0e-11 72.4 75 56.0
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.0e-11 72.4 80 50.0
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.0e-11 72.4 66 57.6
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 3.4e-11 71.6 82 45.1
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.4e-11 71.6 83 49.4
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 3.4e-11 71.6 80 51.2
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 4.5e-11 71.2 85 48.2
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 4.5e-11 71.2 83 50.6
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 5.9e-11 70.9 80 50.0
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 5.9e-11 70.9 83 47.0
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.9e-11 70.9 83 47.0
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 7.7e-11 70.5 74 55.4
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 7.7e-11 70.5 79 51.9
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-10 70.1 81 51.9
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.7e-10 69.3 81 46.9
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.7e-10 69.3 54 63.0
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.2e-10 68.9 76 51.3
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 2.2e-10 68.9 81 48.1
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 3.8e-10 68.2 79 48.1
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 6.5e-10 67.4 82 43.9
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.5e-10 67.4 77 48.1
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.5e-10 67.4 77 48.1
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.5e-10 67.4 79 45.6
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.1e-09 66.6 57 56.1
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.4e-09 66.2 79 45.6
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.9e-09 65.9 76 48.7
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 2.5e-09 65.5 80 46.2
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.2e-09 64.7 73 46.6
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 5.5e-09 64.3 80 41.2
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 7.2e-09 63.9 84 48.8
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 9.4e-09 63.5 87 44.8
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 3.6e-08 61.6 78 42.3
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 3.6e-08 61.6 41 63.4
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 4.7e-08 61.2 82 46.3
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 6.1e-08 60.8 76 46.1
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 7.9e-08 60.5 78 38.5
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.0e-07 60.1 84 45.2
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.0e-07 60.1 74 44.6
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.8e-07 59.3 73 42.5
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 2.3e-07 58.9 77 42.9
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 2.3e-07 58.9 78 41.0
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 3.0e-07 58.5 80 41.2
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.0e-07 58.5 84 44.0
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.9e-07 58.2 84 42.9
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 5.1e-07 57.8 80 46.2
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.7e-07 57.4 80 37.5
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 6.7e-07 57.4 80 43.8
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 6.7e-07 57.4 80 46.2
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 8.8e-07 57.0 78 44.9
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 8.8e-07 57.0 87 39.1
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 8.8e-07 57.0 38 63.2
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 1.1e-06 56.6 67 44.8
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.5e-06 56.2 81 40.7
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 3.3e-06 55.1 37 67.6
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 3.3e-06 55.1 86 39.5
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.3e-06 55.1 106 34.0
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 3.3e-06 55.1 83 44.6
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.3e-06 55.1 77 41.6
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 7.4e-06 53.9 102 35.3
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.7e-06 53.5 39 48.7


User provided reference genes

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