Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 8.4e-171 603.6 303 100.0
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 4.2e-130 468.4 303 79.2
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.5e-127 459.9 334 72.5
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 4.4e-127 458.4 334 72.2
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 3.7e-118 428.7 305 71.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.0e-115 420.6 302 69.9
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 3.6e-113 412.1 318 69.2
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 7.5e-111 404.4 305 68.2
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 7.5e-111 404.4 305 68.2
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 7.5e-111 404.4 306 66.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.4e-109 400.2 305 68.2
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.8e-109 399.8 306 69.0
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 1.8e-109 399.8 307 67.8
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 7.7e-108 394.4 306 65.4
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 3.8e-107 392.1 300 66.3
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.6e-105 386.7 308 65.6
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 6.8e-104 381.3 320 62.5
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 6.8e-104 381.3 301 63.8
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 8.8e-104 380.9 320 62.5
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.8e-104 380.9 305 68.5
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 2.0e-103 379.8 302 65.9
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.4e-103 379.0 305 68.2
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 7.5e-103 377.9 320 62.2
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.7e-102 376.7 318 64.8
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.8e-102 375.9 305 67.5
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 3.7e-102 375.6 305 63.9
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.4e-101 373.6 311 65.3
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.4e-101 372.9 305 63.6
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 4.1e-101 372.1 304 62.5
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 2.7e-100 369.4 309 65.4
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.3e-99 366.3 314 63.4
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 3.8e-99 365.5 305 63.3
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 5.0e-99 365.2 313 64.2
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 6.5e-99 364.8 316 61.4
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.1e-98 364.0 308 64.6
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.9e-98 363.2 314 62.4
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.5e-98 362.8 301 64.5
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 5.5e-98 361.7 308 63.0
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 9.5e-98 360.9 306 61.1
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 9.5e-98 360.9 318 62.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-97 360.1 307 61.6
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.1e-97 359.8 304 62.2
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 2.1e-97 359.8 305 62.0
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 3.6e-97 359.0 308 62.7
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 3.6e-97 359.0 311 65.3
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.4e-96 357.1 308 62.3
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.4e-96 357.1 307 61.2
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.8e-96 356.7 294 66.0
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.8e-96 356.7 310 65.5
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 2.3e-96 356.3 308 62.7
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 2.0e-95 353.2 308 61.4
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 4.4e-95 352.1 305 64.9
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 7.5e-95 351.3 304 63.2
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.2e-94 349.7 301 61.1
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 2.8e-94 349.4 306 63.4
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 3.7e-94 349.0 325 60.0
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 4.9e-94 348.6 305 61.0
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 3.5e-92 342.4 307 60.9
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 5.9e-92 341.7 307 60.9
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.3e-91 339.7 310 60.6
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.6e-91 337.8 308 60.7
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 1.1e-90 337.4 306 58.2
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.5e-90 337.0 304 59.2
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.9e-90 336.7 309 58.6
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 7.3e-90 334.7 305 59.3
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.2e-89 334.0 305 57.7
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.6e-89 333.6 316 59.8
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 6.1e-89 331.6 304 61.5
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.4e-88 330.5 306 59.5
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.3e-88 329.7 317 59.6
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 4.0e-88 328.9 318 57.5
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 5.2e-88 328.6 312 60.6
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.5e-87 327.0 317 59.3
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 7.5e-87 324.7 283 60.8
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 7.5e-87 324.7 304 56.6
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.7e-86 323.6 307 57.0
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.2e-86 323.2 304 55.3
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 8.3e-86 321.2 309 55.0
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 5.9e-84 315.1 256 65.2
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.0e-83 314.3 319 58.9
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.9e-82 310.1 308 55.5
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.0e-80 302.4 249 67.1
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 2.6e-79 299.7 307 56.4
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.3e-78 297.4 314 56.1
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 2.4e-77 293.1 317 55.8
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.6e-73 280.4 311 52.1
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.3e-70 270.8 392 42.9
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-69 267.7 337 51.3
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.4e-69 267.3 302 52.0
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-69 267.3 358 48.0
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 5.4e-69 265.4 308 52.3
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 9.2e-69 264.6 317 53.6
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 1.2e-68 264.2 316 54.1
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.1e-68 263.5 353 48.2
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.5e-68 262.7 315 53.3
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 4.6e-68 262.3 316 53.8
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 7.8e-68 261.5 310 51.3
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-67 261.2 316 53.8
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.0e-67 261.2 316 53.8
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.9e-66 256.9 318 52.2
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.8e-65 253.1 306 48.0
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 4.7e-65 252.3 312 52.2
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 8.1e-65 251.5 339 48.7
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.1e-64 251.1 306 47.7
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.6e-63 246.5 233 58.4
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.3e-62 244.2 310 45.5
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.7e-62 243.8 286 50.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 3.2e-61 239.6 308 47.7
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.3e-59 234.2 263 50.2
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 4.3e-58 229.2 306 47.7
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 4.7e-57 225.7 299 46.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 2.3e-51 206.8 299 44.5
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 7.3e-50 201.8 179 59.2
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.1e-48 198.0 292 48.3
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 3.4e-47 193.0 361 40.7
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.5e-47 192.6 145 66.2
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 9.3e-45 184.9 229 54.6
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.3e-43 181.0 316 44.0
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 8.7e-43 178.3 303 44.2
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 5.6e-42 175.6 301 42.2
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 4.8e-41 172.6 252 47.2
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 2.2e-38 163.7 198 51.0
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 2.4e-37 160.2 218 49.1
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 7.1e-37 158.7 252 43.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 4.6e-36 156.0 218 47.7
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 6.0e-36 155.6 126 66.7
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.1e-34 151.4 115 64.3
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.1e-34 151.4 256 41.0
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 1.3e-33 147.9 115 62.6
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.1e-33 147.1 148 54.7
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.8e-33 146.7 184 48.4
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 4.8e-33 146.0 288 38.9
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 4.8e-33 146.0 159 50.3
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.4e-32 144.4 158 49.4
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.3e-32 142.5 184 48.4
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.5e-31 141.0 164 49.4
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.6e-31 140.2 106 66.0
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 7.6e-31 138.7 103 67.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.0e-30 138.3 185 45.4
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 4.9e-30 136.0 289 41.5
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-29 134.8 289 41.2
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.4e-29 134.4 289 41.2
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.2e-29 132.9 173 46.8
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 2.1e-28 130.6 134 55.2
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.1e-28 130.6 173 46.2
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.1e-24 116.3 145 49.0
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 7.9e-20 102.1 179 40.2
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 3.7e-17 93.2 103 50.5
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.4e-16 90.5 78 64.1
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 7.7e-15 85.5 272 28.7
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-13 81.6 137 45.3
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.6e-12 77.8 71 56.3
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-11 75.1 55 65.5
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 4.8e-09 66.2 54 57.4
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 7.0e-08 62.4 57 56.1
DCAR_024051 Daucus carota HOM05D004212 ORTHO05D005128 1.3e-06 58.2 63 55.6
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.9e-06 57.0 38 76.3
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 2.9e-06 57.0 95 40.0
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 2.9e-06 57.0 95 40.0
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 3.8e-06 56.6 55 52.7
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 3.8e-06 56.6 55 52.7
AL5G35160 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.0e-06 56.2 47 61.7


User provided reference genes

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