Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 8.4e-48 193.4 98 100.0
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 4.2e-31 137.9 105 79.0
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 2.1e-30 135.6 99 74.7
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 2.1e-30 135.6 99 74.7
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.8e-27 125.2 99 72.7
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 3.7e-27 124.8 96 69.8
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.2e-25 119.8 98 65.3
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 1.5e-25 119.4 97 67.0
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.2e-24 115.5 100 69.0
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.9e-24 115.2 101 59.4
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 5.0e-24 114.4 98 66.3
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.1e-23 113.2 85 71.8
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 2.5e-23 112.1 102 63.7
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 4.2e-23 111.3 96 69.8
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 5.5e-23 110.9 103 65.0
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 5.5e-23 110.9 103 65.0
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.6e-22 109.4 95 65.3
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.1e-22 109.0 96 61.5
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.0e-21 106.7 105 61.9
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.8e-21 105.9 96 62.5
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 3.0e-21 105.1 99 60.6
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.0e-21 105.1 97 60.8
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 8.8e-21 103.6 97 56.7
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 8.8e-21 103.6 89 65.2
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.5e-20 102.8 97 59.8
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 2.0e-20 102.4 96 58.3
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 3.3e-20 101.7 92 67.4
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 3.3e-20 101.7 95 62.1
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.3e-20 101.7 98 57.1
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 4.4e-20 101.3 93 63.4
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.2e-19 99.0 101 59.4
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.2e-19 99.0 101 59.4
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 4.8e-19 97.8 98 60.2
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.1e-18 96.7 102 56.9
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 3.1e-18 95.1 101 60.4
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 4.1e-18 94.7 97 53.6
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 5.3e-18 94.4 97 53.6
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 1.2e-17 93.2 89 58.4
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 2.6e-17 92.0 99 52.5
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.6e-17 92.0 88 54.5
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 3.5e-17 91.7 87 62.1
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.5e-17 91.7 93 57.0
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 7.7e-17 90.5 98 56.1
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 7.7e-17 90.5 97 56.7
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.0e-16 90.1 79 59.5
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.3e-16 89.7 100 56.0
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 1.7e-16 89.4 98 56.1
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.8e-16 88.2 101 56.4
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 5.0e-16 87.8 94 55.3
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 1.1e-15 86.7 102 52.9
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.1e-15 86.7 97 50.5
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.9e-15 85.9 99 49.5
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.9e-15 85.9 91 53.8
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.5e-15 85.5 93 53.8
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 2.5e-15 85.5 97 57.7
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 3.2e-15 85.1 100 57.0
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 4.2e-15 84.7 99 53.5
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 4.2e-15 84.7 96 51.0
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 7.2e-15 84.0 91 53.8
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.2e-14 83.2 74 64.9
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.2e-14 83.2 85 56.5
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 2.7e-14 82.0 101 54.5
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 8.0e-14 80.5 98 50.0
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.4e-13 79.7 91 50.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 2.3e-13 79.0 92 52.2
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 2.3e-13 79.0 98 53.1
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 4.0e-13 78.2 77 53.2
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 4.0e-13 78.2 105 53.3
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 5.2e-13 77.8 96 50.0
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 3.4e-12 75.1 96 46.9
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 5.7e-12 74.3 88 50.0
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 9.8e-12 73.6 96 51.0
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 9.8e-12 73.6 103 48.5
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.8e-11 72.0 102 46.1
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.7e-11 71.6 102 46.1
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 8.3e-11 70.5 102 46.1
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.1e-10 70.1 85 50.6
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 1.4e-10 69.7 88 50.0
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 1.4e-10 69.7 88 48.9
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 3.1e-10 68.6 88 47.7
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 3.1e-10 68.6 88 47.7
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 4.1e-10 68.2 88 47.7
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 7.0e-10 67.4 88 45.5
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 1.6e-09 66.2 88 44.3
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 1.6e-09 66.2 88 44.3
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 2.0e-09 65.9 88 43.2
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 2.0e-09 65.9 91 49.5
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 3.5e-09 65.1 86 45.3
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 5.9e-09 64.3 58 53.4
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 7.7e-09 63.9 88 45.5
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.3e-08 63.2 94 46.8
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.3e-08 63.2 85 44.7
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 2.9e-08 62.0 88 45.5
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 2.9e-08 62.0 78 56.4
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 3.8e-08 61.6 88 42.0
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 8.5e-08 60.5 69 55.1
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 1.1e-07 60.1 88 42.0
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 1.5e-07 59.7 92 45.7
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 1.5e-07 59.7 96 44.8
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 1.9e-07 59.3 88 43.2
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.9e-07 59.3 69 53.6
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 3.2e-07 58.5 89 44.9
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 3.2e-07 58.5 89 44.9
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 3.2e-07 58.5 85 43.5
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 3.2e-07 58.5 85 43.5
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.2e-07 58.2 99 36.4
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 2.1e-06 55.8 80 47.5
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 2.1e-06 55.8 46 60.9
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 2.1e-06 55.8 87 43.7
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 4.7e-06 54.7 83 43.4
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 6.1e-06 54.3 88 39.8
Prupe.6G068600 Prunus persica HOM05D007574 ORTHO05D007552 6.1e-06 54.3 87 35.6


User provided reference genes

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