Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 9.9e-126 453.4 215 100.0
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 4.9e-117 424.5 215 92.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.5e-116 421.0 215 92.1
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.7e-115 418.7 215 91.6
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 2.7e-115 418.7 214 91.6
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 2.7e-115 418.7 214 91.6
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 4.6e-115 417.9 215 91.6
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.0e-114 416.8 215 92.1
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.0e-114 415.2 219 90.4
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 6.7e-114 414.1 215 91.2
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 6.7e-114 414.1 215 91.2
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 1.9e-113 412.5 215 90.7
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.9e-113 412.5 215 90.2
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 3.3e-113 411.8 216 91.7
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 4.3e-113 411.4 216 90.7
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 5.7e-113 411.0 216 91.2
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 9.6e-113 410.2 216 91.2
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 9.6e-113 410.2 215 88.8
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 9.6e-113 410.2 215 91.2
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.3e-112 409.8 215 90.2
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.3e-112 409.8 213 88.7
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.8e-112 408.7 216 90.7
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 4.8e-112 407.9 215 88.4
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 6.3e-112 407.5 215 90.2
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 8.2e-112 407.1 215 88.4
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 1.4e-111 406.4 215 87.9
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-111 406.4 216 89.4
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.4e-111 405.6 219 89.0
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.1e-111 405.2 215 89.8
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 3.1e-111 405.2 215 89.8
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.6e-110 402.1 217 88.5
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 3.4e-110 401.7 237 82.3
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 7.6e-110 400.6 217 87.1
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.0e-109 400.2 215 87.4
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.3e-109 399.8 217 87.1
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 2.2e-109 399.1 216 89.4
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 2.9e-109 398.7 215 87.4
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 6.5e-109 397.5 231 83.5
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 8.4e-109 397.1 216 88.4
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 1.9e-108 396.0 217 87.1
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 2.5e-108 395.6 215 87.9
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 3.2e-108 395.2 218 86.2
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 9.3e-108 393.7 215 85.1
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 9.3e-108 393.7 215 85.1
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.1e-107 392.5 216 88.0
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.1e-107 392.5 216 88.0
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 2.1e-107 392.5 217 86.2
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 3.5e-107 391.7 215 85.6
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 4.6e-107 391.3 215 87.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 4.6e-107 391.3 216 85.2
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 7.9e-107 390.6 216 87.5
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 7.9e-107 390.6 210 86.2
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.3e-106 389.8 216 86.6
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 3.0e-106 388.7 217 85.3
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 5.1e-106 387.9 216 87.0
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.5e-105 386.3 216 86.6
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.5e-105 386.3 215 85.6
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 1.5e-105 386.3 225 83.1
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.9e-105 386.0 215 82.8
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.3e-105 384.8 216 86.1
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 3.7e-104 381.7 215 83.3
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 3.7e-104 381.7 248 75.8
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 8.2e-104 380.6 215 84.2
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.1e-103 380.2 200 87.5
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.4e-103 379.0 216 82.4
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 5.3e-103 377.9 216 82.4
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.6e-102 375.6 216 81.9
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 2.6e-102 375.6 215 84.7
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 3.4e-102 375.2 216 81.5
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 3.4e-102 375.2 216 81.5
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 3.4e-102 375.2 216 81.9
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 83.8
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.5e-102 374.8 200 88.5
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 81.5
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.3e-101 373.2 216 81.5
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 6.5e-101 370.9 216 81.0
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 8.5e-101 370.5 220 81.8
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 1.9e-100 369.4 241 75.9
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.9e-100 369.4 219 78.1
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.2e-99 366.7 196 88.8
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.6e-99 366.3 186 91.4
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 7.9e-99 364.0 219 77.2
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 1.0e-98 363.6 216 79.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.4e-98 363.2 190 90.5
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 3.0e-98 362.1 188 89.9
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.5e-97 359.8 188 88.3
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.0e-97 359.4 190 89.5
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.5e-97 359.0 190 88.4
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 2.5e-97 359.0 198 86.9
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 7.4e-97 357.5 199 82.9
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 9.7e-97 357.1 217 79.3
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 2.2e-96 355.9 189 88.9
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 6.3e-96 354.4 211 78.7
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 8.2e-96 354.0 180 90.0
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.8e-95 352.8 178 90.4
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 2.4e-95 352.4 203 80.8
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.2e-94 350.1 186 87.1
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 2.0e-94 349.4 214 77.1
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 7.9e-91 337.4 207 76.8
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 8.8e-90 334.0 192 80.2
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.4e-87 325.9 196 73.5
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.7e-85 319.7 196 70.9
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.7e-83 312.4 215 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 3.7e-80 302.0 196 69.4
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.2e-76 288.5 172 80.2
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.2e-76 288.5 172 80.2
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.4e-74 283.5 145 90.3
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 3.4e-73 278.9 145 86.9
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 8.3e-72 274.2 199 63.8
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 7.7e-70 267.7 133 91.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 5.2e-66 255.0 133 88.0
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-65 253.4 133 88.7
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.0e-62 243.0 130 83.8
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.1e-60 237.3 122 87.7
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.5e-60 234.2 124 87.1
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 4.4e-57 225.3 146 74.7
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.9e-50 201.1 106 88.7
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.7e-40 169.1 93 84.9
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.4e-39 167.2 89 88.8
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.8e-35 152.9 86 84.9
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.8e-34 150.2 82 86.6
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 2.4e-26 123.2 208 35.1
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 6.0e-22 108.6 209 34.4
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 2.6e-17 93.2 64 70.3
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 8.7e-13 78.2 40 87.5
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 9.6e-12 74.7 64 59.4
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.3e-08 64.3 41 63.4
MD12G1146300 Malus domestica HOM05D000026 ORTHO05D000094 2.9e-08 63.2 75 50.7


User provided reference genes

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