Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 3.9e-128 461.5 232 100.0
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 2.4e-64 249.6 234 61.5
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 2.8e-57 226.1 232 56.9
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 3.8e-54 215.7 234 56.4
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 9.0e-48 194.5 241 48.5
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 2.1e-44 183.3 238 47.1
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 7.9e-44 181.4 242 48.3
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 8.7e-43 177.9 239 47.7
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 1.5e-42 177.2 238 45.4
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 2.1e-41 173.3 237 47.7
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 1.2e-39 167.5 232 46.1
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 1.2e-39 167.5 243 46.5
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 3.4e-39 166.0 233 48.5
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 9.9e-39 164.5 241 44.8
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 4.9e-38 162.2 237 46.4
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 2.4e-37 159.8 237 42.2
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 4.2e-37 159.1 239 45.6
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 7.1e-37 158.3 237 45.6
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 1.6e-36 157.1 237 45.1
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 2.1e-36 156.8 232 45.7
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 4.6e-36 155.6 236 45.3
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 4.6e-36 155.6 232 43.5
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 6.0e-36 155.2 234 44.4
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.0e-35 154.5 237 45.1
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 1.3e-35 154.1 242 44.2
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 6.7e-35 151.8 239 44.8
vmacro20167 Vaccinium macrocarpon HOM05D007762 ORTHO05D008066 8.7e-35 151.4 236 44.5
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.5e-34 150.6 234 43.6
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.5e-34 150.6 234 43.6
Glyma.07G134000 Glycine max HOM05D007762 ORTHO05D008066 2.5e-34 149.8 241 42.3
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 3.3e-34 149.4 244 42.2
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 9.6e-34 147.9 238 40.3
Rhsim05G0194300 Rhododendron simsii HOM05D007762 ORTHO05D008066 3.7e-33 146.0 238 45.4
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 1.8e-32 143.7 229 40.6
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 2.4e-32 143.3 238 40.8
Lalb_Chr19g0125241 Lupinus albus HOM05D007762 ORTHO05D008066 5.3e-32 142.1 234 40.6
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 6.9e-32 141.7 237 43.0
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 6.9e-32 141.7 237 41.8
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 9.0e-32 141.4 241 42.3
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 4.5e-31 139.0 238 43.7
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 2.2e-30 136.7 241 40.2
Phvul.008G119100 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 2.2e-30 136.7 238 39.5
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 2.9e-30 136.3 237 40.9
Psat3g137360 Pisum sativum HOM05D007762 ORTHO05D008066 2.7e-28 129.8 238 36.1
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 1.0e-27 127.9 241 39.8
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 1.0e-27 127.9 240 39.6
Medtr7g062260 Medicago truncatula HOM05D007762 ORTHO05D008066 1.3e-27 127.5 235 40.4
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 3.9e-27 125.9 228 38.6
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 3.9e-27 125.9 241 39.8
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 3.9e-27 125.9 241 39.8
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 8.7e-27 124.8 232 36.2
Potri.016G100100 Populus trichocarpa HOM05D007762 ORTHO05D008066 1.1e-26 124.4 238 39.5
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 1.5e-26 124.0 241 39.0
MSTRG.26781 Avicennia marina HOM05D007762 ORTHO05D008066 5.7e-26 122.1 242 37.6
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 1.3e-25 120.9 243 39.5
Nn2g11166 Nelumbo nucifera HOM05D007762 ORTHO05D008066 1.6e-25 120.6 230 38.3
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 8.2e-25 118.2 243 39.5
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.1e-24 117.9 241 36.5
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 1.8e-24 117.1 256 38.3
MELO3C009249.2 Cucumis melo HOM05D007762 ORTHO05D008066 1.5e-23 114.0 211 37.0
MBI05_g29690_MAGBIO Magnolia biondii HOM05D007762 ORTHO05D008066 1.5e-23 114.0 240 39.6
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 2.6e-23 113.2 237 39.2
TPR.G1723 Trifolium pratense HOM05D007762 ORTHO05D008066 2.6e-23 113.2 233 35.6
Solyc10g086560.3 Solanum lycopersicum HOM05D007762 ORTHO05D008066 3.4e-23 112.8 234 39.7
FAN28G1746 Fragaria x ananassa HOM05D007762 ORTHO05D008066 7.6e-23 111.7 213 39.0
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 1.0e-22 111.3 242 38.4
Sopen10g035940 Solanum pennellii HOM05D007762 ORTHO05D008066 1.0e-22 111.3 234 39.3
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 6.5e-22 108.6 234 35.9
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 1.9e-21 107.1 250 34.8
PGR004G1606 Punica granatum HOM05D007762 ORTHO05D008066 1.6e-20 104.0 245 34.7
Duzib093G0438 Durio zibethinus HOM05D007762 ORTHO05D008066 7.4e-18 95.1 209 41.1
arahy.Tifrunner.gnm1.ann1.NCI3TY Arachis hypogaea HOM05D007762 ORTHO05D008066 1.3e-17 94.4 203 34.5
Manes.09G092300 Manihot esculenta HOM05D007762 ORTHO05D008066 1.3e-17 94.4 160 43.1
MSTRG.5650 Avicennia marina HOM05D007762 ORTHO05D008066 1.1e-16 91.3 240 34.6
Lsat_1_v5_gn_9_33361 Lactuca sativa HOM05D007762 ORTHO05D008066 2.6e-15 86.7 231 35.1
PSO339G2571 Papaver somniferum HOM05D007762 ORTHO05D008066 5.9e-15 85.5 250 33.6
DCAR_024059 Daucus carota HOM05D007762 ORTHO05D008066 8.5e-14 81.6 238 32.4
Peaxi162Scf00165g00078 Petunia axillaris HOM05D007762 ORTHO05D008066 1.2e-12 77.8 235 32.8
EL10As1g23088 Beta vulgaris HOM05D021339 ORTHO05D008066 3.6e-12 76.3 232 33.2
PGSC0003DMG402019151 Solanum tuberosum HOM05D007762 ORTHO05D008066 4.7e-12 75.9 216 35.2
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 6.1e-12 75.5 122 41.8
Sc22g0004450 Simmondsia chinensis HOM05D007762 ORTHO05D008066 3.0e-11 73.2 238 29.8
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 5.1e-11 72.4 103 45.6
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 6.7e-11 72.0 240 32.9
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 8.8e-11 71.6 104 45.2
THA.LOC104827023 Tarenaya hassleriana HOM05D012592 ORTHO05D008066 8.8e-11 71.6 246 29.7
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 4.4e-10 69.3 104 43.3
Migut.L01955 Erythranthe guttata HOM05D007762 ORTHO05D008066 4.4e-10 69.3 232 31.5
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 5.7e-10 68.9 104 43.3
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 7.4e-10 68.6 127 40.9
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 7.4e-10 68.6 102 45.1
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 7.4e-10 68.6 127 40.9
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 9.7e-10 68.2 102 43.1
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 9.7e-10 68.2 97 41.2
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 9.7e-10 68.2 102 44.1
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 9.7e-10 68.2 106 42.5
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 2.8e-09 66.6 91 45.1
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 3.7e-09 66.2 107 41.1
Hund10692 Selenicereus undatus HOM05D021339 ORTHO05D008066 3.7e-09 66.2 234 29.5
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 6.3e-09 65.5 94 42.6
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 2.4e-08 63.5 236 30.5
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 4.1e-08 62.8 95 41.1
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 7.0e-08 62.0 156 33.3
CDE02G1216 Ceratophyllum demersum HOM05D007762 ORTHO05D008066 9.1e-08 61.6 231 29.9
A10p33410 Brassica napus HOM05D012592 ORTHO05D008066 1.2e-07 61.2 233 27.0
BraA10t45372Z Brassica rapa HOM05D012592 ORTHO05D008066 1.2e-07 61.2 233 27.0
Migut.J00315 Erythranthe guttata HOM05D007762 ORTHO05D008066 1.2e-07 61.2 233 27.5
Thhalv10015459m.g Eutrema salsugineum HOM05D012592 ORTHO05D008066 1.2e-07 61.2 172 31.4
HanXRQChr01g0001221 Helianthus annuus HOM05D007762 ORTHO05D008066 2.6e-07 60.1 56 58.9
AL6G11430 Arabidopsis lyrata HOM05D012592 ORTHO05D008066 3.4e-07 59.7 231 30.7
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 3.4e-07 59.7 119 38.7
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 3.4e-07 59.7 242 30.6
AT5G02200 Arabidopsis thaliana HOM05D012592 ORTHO05D008066 1.0e-06 58.2 142 33.1
CARHR211150 Cardamine hirsuta HOM05D012592 ORTHO05D008066 1.3e-06 57.8 88 40.9
AUR62042387 Chenopodium quinoa HOM05D021339 ORTHO05D008066 1.3e-06 57.8 238 29.4
ClCG04G008070 Citrullus lanatus HOM05D041730 ORTHO05D034779 3.8e-06 56.2 79 43.0
MELO3C003141.2 Cucumis melo HOM05D041730 ORTHO05D034779 3.8e-06 56.2 79 43.0
CsaV3_4G025130 Cucumis sativus L. HOM05D041730 ORTHO05D034779 8.5e-06 55.1 79 41.8


User provided reference genes

Program Settings