Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 7.8e-88 327.0 156 100.0
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 8.1e-53 210.7 157 69.4
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 1.1e-52 210.3 161 67.7
Cfa017361 Carpinus fangiana HOM05D007483 ORTHO05D009133 4.2e-49 198.4 162 64.8
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 2.8e-45 185.7 161 62.1
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 1.4e-44 183.3 158 61.4
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 2.4e-44 182.6 119 73.1
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 2.4e-44 182.6 157 61.1
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 5.3e-44 181.4 156 60.3
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 1.5e-43 179.9 157 58.0
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 4.5e-43 178.3 156 59.6
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 4.5e-43 178.3 156 60.3
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 5.8e-43 177.9 158 59.5
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 7.6e-43 177.6 153 62.1
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 1.3e-42 176.8 158 60.1
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 1.7e-42 176.4 157 57.3
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 1.7e-42 176.4 158 60.8
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 2.2e-42 176.0 166 57.8
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 2.2e-42 176.0 156 59.0
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 2.9e-42 175.6 158 56.3
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 2.9e-42 175.6 157 59.9
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 4.9e-42 174.9 165 56.4
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 6.5e-42 174.5 161 58.4
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 2.5e-41 172.6 102 78.4
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 2.5e-41 172.6 162 58.0
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 4.2e-41 171.8 143 60.8
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 5.5e-41 171.4 153 60.1
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 7.1e-41 171.0 145 59.3
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 9.3e-41 170.6 98 80.6
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 2.1e-40 169.5 88 86.4
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 2.7e-40 169.1 124 66.9
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 2.7e-40 169.1 93 80.6
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 3.5e-40 168.7 161 58.4
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 6.0e-40 167.9 149 58.4
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 7.9e-40 167.5 160 56.9
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 1.0e-39 167.2 159 58.5
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 1.8e-39 166.4 98 78.6
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 2.3e-39 166.0 161 58.4
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 3.0e-39 165.6 80 92.5
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 3.9e-39 165.2 161 55.3
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 3.9e-39 165.2 107 71.0
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 5.1e-39 164.9 152 56.6
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 5.1e-39 164.9 94 78.7
CANSAT11G2488 Cannabis sativa HOM05D007483 ORTHO05D009133 8.7e-39 164.1 157 57.3
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 1.1e-38 163.7 163 55.2
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 1.5e-38 163.3 101 74.3
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 2.5e-38 162.5 161 53.4
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 3.3e-38 162.2 88 83.0
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 4.3e-38 161.8 82 86.6
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 4.3e-38 161.8 87 80.5
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 5.7e-38 161.4 159 57.2
PSO339G1657 Papaver somniferum HOM05D007483 ORTHO05D009133 9.7e-38 160.6 109 69.7
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 1.6e-37 159.8 152 53.9
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 1.6e-37 159.8 100 73.0
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 3.7e-37 158.7 152 54.6
Hund10634 Selenicereus undatus HOM05D007483 ORTHO05D009133 3.7e-37 158.7 116 68.1
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 6.3e-37 157.9 154 54.5
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 6.3e-37 157.9 159 55.3
HanXRQChr16g0497811 Helianthus annuus HOM05D007483 ORTHO05D009133 1.1e-36 157.1 127 59.8
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 1.8e-36 156.4 105 69.5
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 2.4e-36 156.0 108 68.5
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 2.4e-36 156.0 108 68.5
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 3.1e-36 155.6 105 69.5
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 3.1e-36 155.6 105 69.5
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 4.1e-36 155.2 84 78.6
Ah.06g191870 Amaranthus hybridus HOM05D007483 ORTHO05D009133 5.3e-36 154.8 113 67.3
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 5.3e-36 154.8 126 61.9
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 6.9e-36 154.5 81 84.0
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 6.9e-36 154.5 87 77.0
HPP92_019244 Vanilla planifolia HOM05D007483 ORTHO05D009133 9.0e-36 154.1 95 72.6
SEGI_13406 Sequoiadendron giganteum HOM05D007483 ORTHO05D009133 1.2e-35 153.7 102 70.6
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 2.6e-35 152.5 107 66.4
Solyc10g084810.3 Solanum lycopersicum HOM05D007483 ORTHO05D009133 4.5e-35 151.8 73 89.0
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 1.7e-34 149.8 158 53.2
DCAR_028750 Daucus carota HOM05D007483 ORTHO05D009133 1.1e-33 147.1 73 87.7
Oeu007795.1 Olea europaea HOM05D007483 ORTHO05D009133 9.4e-33 144.1 71 87.3
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 4.6e-32 141.7 108 58.3
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 7.9e-32 141.0 83 72.3
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 2.3e-31 139.4 112 59.8
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 2.3e-31 139.4 121 53.7
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 3.9e-31 138.7 143 55.2
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 8.8e-31 137.5 94 70.2
Ciclev10012381m.g Citrus clementina HOM05D007483 ORTHO05D009133 8.8e-31 137.5 169 47.9
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 8.8e-31 137.5 82 79.3
FvH4_6g13510 Fragaria vesca HOM05D007483 ORTHO05D009133 1.1e-30 137.1 66 87.9
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 3.3e-30 135.6 68 89.7
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 3.3e-30 135.6 79 81.0
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 4.3e-30 135.2 68 89.7
Os02g0260400 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 7.4e-30 134.4 66 84.8
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 9.7e-30 134.0 68 88.2
MELO3C033192.2 Cucumis melo HOM05D007483 ORTHO05D009133 1.1e-28 130.6 70 82.9
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 1.4e-28 130.2 67 88.1
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 1.4e-28 130.2 73 80.8
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 1.8e-28 129.8 79 74.7
Cre17.g720183 Chlamydomonas reinhardtii HOM05D007483 ORTHO05D009133 7.2e-25 117.9 71 66.2
SMO165G0096 Selaginella moellendorffii HOM05D007483 ORTHO05D009133 1.8e-23 113.2 65 76.9
Peaxi162Scf00094g01112 Petunia axillaris HOM05D007483 ORTHO05D009133 2.3e-23 112.8 74 68.9
PRCOL_00002574 Prasinoderma coloniale HOM05D007483 ORTHO05D009133 1.4e-20 103.6 77 63.6
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 2.2e-18 96.3 61 75.4
MCO07G608 Micromonas commoda HOM05D007483 ORTHO05D009133 8.5e-18 94.4 63 55.6
Haze_20813 Corylus avellana HOM05D003730 ORTHO05D004458 2.0e-11 73.2 91 52.7
CBR_g19673 Chara braunii HOM05D007483 ORTHO05D009133 3.0e-07 59.3 37 67.6
Sc20g0003470 Simmondsia chinensis HOM05D007483 ORTHO05D009133 1.5e-06 57.0 99 40.4


User provided reference genes

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