Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.3e-26 120.9 60 100.0
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.6e-23 111.3 60 93.3
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.4e-23 110.5 60 93.3
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.3e-22 109.0 60 91.7
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.2e-21 102.8 60 86.7
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.6e-20 100.5 60 81.7
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 6.2e-17 90.1 60 75.0
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 3.1e-16 87.8 56 76.8
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 4.4e-15 84.0 61 72.1
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 4.4e-15 84.0 60 73.3
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 5.8e-15 83.6 55 72.7
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 5.8e-15 83.6 60 73.3
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 7.5e-15 83.2 60 73.3
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 7.5e-15 83.2 55 72.7
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 7.5e-15 83.2 60 73.3
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 1.3e-14 82.4 54 72.2
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 2.2e-14 81.6 60 73.3
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 3.7e-14 80.9 60 71.7
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 3.7e-14 80.9 62 69.4
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 4.9e-14 80.5 62 69.4
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 8.3e-14 79.7 57 70.2
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.1e-13 79.3 60 71.7
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.1e-13 79.3 54 75.9
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.1e-13 79.3 54 72.2
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 2.4e-13 78.2 60 70.0
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 3.2e-13 77.8 60 70.0
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 3.2e-13 77.8 60 70.0
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 4.1e-13 77.4 60 68.3
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 4.1e-13 77.4 60 66.7
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 4.1e-13 77.4 60 65.0
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 5.4e-13 77.0 52 71.2
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 7.1e-13 76.6 60 70.0
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 7.1e-13 76.6 54 70.4
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 7.1e-13 76.6 60 65.0
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 9.2e-13 76.3 60 63.3
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 1.6e-12 75.5 60 68.3
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 2.7e-12 74.7 60 68.3
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 2.7e-12 74.7 62 66.1
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.7e-12 74.7 61 67.2
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 2.7e-12 74.7 61 67.2
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 3.5e-12 74.3 55 67.3
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 3.5e-12 74.3 60 60.0
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 3.5e-12 74.3 57 66.7
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 4.6e-12 73.9 60 68.3
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 4.6e-12 73.9 60 68.3
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 4.6e-12 73.9 59 62.7
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 6.0e-12 73.6 60 68.3
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 6.0e-12 73.6 60 68.3
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 6.0e-12 73.6 60 65.0
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 7.8e-12 73.2 57 68.4
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 7.8e-12 73.2 57 68.4
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 7.8e-12 73.2 57 68.4
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 7.8e-12 73.2 60 65.0
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 7.8e-12 73.2 75 54.7
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.0e-11 72.8 49 75.5
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 1.0e-11 72.8 60 65.0
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 1.0e-11 72.8 59 59.3
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 1.3e-11 72.4 57 64.9
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 1.7e-11 72.0 59 64.4
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 2.3e-11 71.6 60 66.7
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 2.3e-11 71.6 60 66.7
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 2.3e-11 71.6 60 65.0
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 3.0e-11 71.2 56 57.1
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 3.0e-11 71.2 58 67.2
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 3.9e-11 70.9 54 63.0
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 3.9e-11 70.9 54 63.0
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 3.9e-11 70.9 60 61.7
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 6.6e-11 70.1 51 64.7
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 8.6e-11 69.7 60 60.0
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 1.9e-10 68.6 60 58.3
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 1.9e-10 68.6 60 60.0
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.9e-10 68.6 51 64.7
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 2.5e-10 68.2 50 68.0
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 4.3e-10 67.4 50 66.0
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.3e-10 66.6 51 66.7
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.3e-10 66.6 51 66.7
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 9.5e-10 66.2 41 75.6
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 1.6e-09 65.5 48 66.7
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 1.6e-09 65.5 59 59.3
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 3.1e-08 61.2 54 50.0
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 6.8e-08 60.1 93 45.2
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 2.6e-07 58.2 51 64.7
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 4.4e-07 57.4 61 54.1
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 1.7e-06 55.5 57 52.6


User provided reference genes

Program Settings