Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.0e-259 898.7 470 100.0
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 6.2e-213 744.2 459 85.6
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 7.5e-211 737.3 459 85.0
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.7e-210 734.9 472 82.2
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 6.0e-208 727.6 485 80.4
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 6.2e-205 717.6 456 83.3
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 8.1e-205 717.2 470 79.1
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 8.3e-202 707.2 470 79.6
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 8.3e-202 707.2 471 77.7
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.6e-200 703.0 470 78.5
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.5e-200 701.8 462 78.6
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 2.3e-199 699.1 462 78.8
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 6.6e-199 697.6 470 78.1
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 8.6e-199 697.2 470 78.1
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 5.6e-198 694.5 470 78.5
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 4.7e-197 691.4 466 78.3
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.2e-194 682.6 470 77.0
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 3.8e-194 681.8 445 78.4
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 4.9e-194 681.4 473 75.9
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 3.2e-193 678.7 473 75.7
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 4.2e-193 678.3 459 78.0
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 5.4e-193 677.9 441 80.3
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 7.1e-193 677.6 444 78.8
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 4.6e-192 674.9 437 79.9
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.3e-191 672.5 470 75.3
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 2.3e-191 672.5 472 74.4
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 3.9e-191 671.8 426 81.2
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 3.9e-191 671.8 439 80.6
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 8.7e-191 670.6 471 74.3
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.9e-190 669.5 468 73.9
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.5e-190 669.1 445 77.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.2e-189 666.8 443 78.3
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.1e-189 666.0 471 74.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 3.6e-189 665.2 470 75.3
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 4.7e-189 664.8 462 74.7
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.1e-188 663.7 472 74.4
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.4e-188 663.3 472 75.4
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.4e-188 662.5 472 74.6
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 3.1e-188 662.1 467 72.2
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 4.0e-188 661.8 472 73.7
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 4.0e-188 661.8 470 74.0
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 5.2e-188 661.4 441 78.7
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 6.9e-188 661.0 472 74.2
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.2e-187 660.2 470 74.7
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 2.6e-187 659.1 494 70.2
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 5.8e-187 657.9 466 74.7
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 7.6e-187 657.5 472 72.5
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 7.6e-187 657.5 469 73.1
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.3e-186 656.8 467 73.4
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.7e-186 656.4 427 78.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 2.2e-186 656.0 467 73.0
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 2.2e-186 656.0 467 73.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 2.2e-186 656.0 472 72.0
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 3.8e-186 655.2 486 73.9
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 3.8e-186 655.2 466 74.2
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 6.4e-186 654.4 463 73.7
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 6.4e-186 654.4 463 74.7
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.1e-185 653.7 448 75.7
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.9e-185 652.9 463 72.4
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 3.2e-185 652.1 467 73.4
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 3.2e-185 652.1 467 73.0
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.2e-185 652.1 467 73.4
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 5.4e-185 651.4 468 73.3
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 7.1e-185 651.0 428 78.0
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 9.3e-185 650.6 464 72.8
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 9.3e-185 650.6 455 74.7
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.2e-184 650.2 467 72.8
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.6e-184 649.8 465 73.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.6e-184 649.8 467 73.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.6e-184 649.8 472 72.9
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 6.0e-184 647.9 465 71.8
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 7.8e-184 647.5 467 72.6
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.0e-183 647.1 467 73.0
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-183 646.7 467 72.8
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 6.6e-183 644.4 463 73.0
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 5.6e-182 641.3 465 72.5
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 7.3e-182 641.0 461 72.9
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.3e-181 640.2 467 71.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.1e-180 637.1 450 72.9
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.4e-180 636.7 464 71.8
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 6.9e-180 634.4 439 75.4
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.2e-179 633.6 422 78.0
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.5e-179 633.3 478 71.5
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 3.4e-179 632.1 493 69.0
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.3e-178 630.2 452 73.2
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.6e-176 623.2 461 71.4
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.3e-175 620.2 399 81.5
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.1e-174 617.1 461 71.8
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.5e-174 615.9 409 78.0
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 7.4e-174 614.4 477 69.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 8.1e-173 610.9 409 77.5
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 4.2e-169 598.6 430 72.6
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.2e-169 598.6 444 70.0
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.0e-167 594.0 552 60.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 2.8e-165 585.9 422 75.6
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 8.2e-165 584.3 411 73.7
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 5.3e-164 581.6 422 70.6
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 6.9e-164 581.3 414 74.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 5.5e-161 571.6 403 76.2
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.4e-156 557.0 424 67.0
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.2e-155 553.9 434 66.6
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 5.0e-154 548.5 386 73.1
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 8.5e-154 547.7 409 71.4
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.4e-153 547.0 398 75.1
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 8.2e-149 531.2 423 65.0
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-133 480.7 340 75.9
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.4e-132 477.2 437 60.0
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.2e-130 469.9 426 62.7
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 8.5e-130 468.0 473 58.4
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 8.5e-130 468.0 358 67.0
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.4e-124 450.7 437 58.8
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 6.5e-122 441.8 329 68.1
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 4.0e-119 432.6 325 72.3
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 9.1e-116 421.4 444 52.7
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 1.1e-105 387.9 388 57.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.7e-101 372.9 251 78.5
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 9.9e-78 295.0 202 75.7
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 9.9e-78 295.0 241 67.2
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 9.9e-78 295.0 229 69.4
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-77 294.7 195 76.9
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.4e-70 270.0 204 69.1
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.8e-64 250.4 218 60.6
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.2e-61 240.7 147 80.3
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.3e-57 226.9 179 70.9
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.8e-53 213.4 465 35.7
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.6e-46 190.7 124 72.6
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.0e-37 159.8 137 65.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.0e-37 159.8 137 65.0
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 7.4e-33 146.0 102 70.6
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.3e-32 145.2 263 38.8
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.2e-30 138.7 106 64.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.2e-30 138.7 156 55.8
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 5.9e-30 136.3 101 74.3
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 7.7e-30 136.0 263 36.9
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.5e-28 131.0 149 52.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.1e-27 126.3 104 64.4
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.1e-19 101.3 117 53.0
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.4e-15 88.6 87 55.2
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 3.5e-14 84.0 46 78.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 3.5e-14 84.0 46 78.3
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 3.2e-12 77.4 82 53.7
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.7e-11 74.3 89 49.4
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 4.7e-11 73.6 61 54.1
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 4.0e-10 70.5 64 57.8
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 4.0e-10 70.5 75 52.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 6.8e-10 69.7 95 43.2
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 6.8e-10 69.7 81 50.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 6.8e-10 69.7 64 56.2
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 8.8e-10 69.3 45 64.4
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 8.8e-10 69.3 45 64.4
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-09 68.9 64 56.2
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-09 68.9 64 56.2
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-09 68.9 64 56.2
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-09 68.9 64 56.2
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-09 68.9 64 56.2
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-09 68.9 64 56.2
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-09 68.6 63 57.1
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 2.0e-09 68.2 64 56.2
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 2.6e-09 67.8 82 48.8
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 4.4e-09 67.0 46 67.4
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.8e-08 64.3 165 34.5
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 1.1e-07 62.4 48 70.8
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.4e-07 61.2 66 53.0
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 3.1e-07 60.8 44 65.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 7.0e-07 59.7 175 30.9


User provided reference genes

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