Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G183000 Carya illinoinensis HOM05D000566 ORTHO05D000686 3.5e-59 231.5 124 100.0
CiPaw.09G068200 Carya illinoinensis HOM05D000566 ORTHO05D000686 2.5e-57 225.3 123 98.4
CiPaw.10G057700 Carya illinoinensis HOM05D000566 ORTHO05D000686 5.3e-47 191.0 123 82.9
Haze_06260 Corylus avellana HOM05D000566 ORTHO05D000686 3.2e-44 181.8 124 83.1
Cfa000590 Carpinus fangiana HOM05D000566 ORTHO05D000686 4.2e-44 181.4 124 82.3
Dinv04629 Davidia involucrata HOM05D000566 ORTHO05D000686 2.5e-41 172.2 124 73.4
Manes.17G054000 Manihot esculenta HOM05D000566 ORTHO05D000686 9.7e-41 170.2 123 71.5
Sed0001579 Sechium edule HOM05D000566 ORTHO05D000686 9.7e-41 170.2 123 76.4
MD05G1303500 Malus domestica HOM05D000566 ORTHO05D000686 1.7e-40 169.5 124 76.6
MELO3C007221.2 Cucumis melo HOM05D000566 ORTHO05D000686 2.2e-40 169.1 123 76.4
CsaV3_6G050790 Cucumis sativus L. HOM05D000566 ORTHO05D000686 2.2e-40 169.1 123 76.4
ClCG01G023640 Citrullus lanatus HOM05D000566 ORTHO05D000686 6.3e-40 167.5 123 75.6
Sabra11G0046300 Salix brachista HOM05D000566 ORTHO05D000686 1.1e-39 166.8 128 75.0
Thecc.06G173300 Theobroma cacao HOM05D000566 ORTHO05D000686 1.4e-39 166.4 121 78.5
TWI38G2249 Tripterygium wilfordii HOM05D000566 ORTHO05D000686 2.4e-39 165.6 126 77.0
Duzib235G1311 Durio zibethinus HOM05D000566 ORTHO05D000686 5.3e-39 164.5 123 76.4
MD10G1282700 Malus domestica HOM05D000566 ORTHO05D000686 5.3e-39 164.5 122 76.2
Prupe.4G059200 Prunus persica HOM05D000566 ORTHO05D000686 1.5e-38 162.9 123 73.2
Nitab4.5_0001608g0010 Nicotiana tabacum HOM05D000566 ORTHO05D000686 2.0e-38 162.5 129 70.5
Actinidia35568 Actinidia chinensis HOM05D000566 ORTHO05D000686 3.4e-38 161.8 124 70.2
vmacro03937 Vaccinium macrocarpon HOM05D000566 ORTHO05D000686 5.9e-38 161.0 129 71.3
Nitab4.5_0000681g0010 Nicotiana tabacum HOM05D000566 ORTHO05D000686 1.0e-37 160.2 129 69.0
TAR624G0866 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.0e-37 160.2 127 73.2
Potri.004G054900 Populus trichocarpa HOM05D000566 ORTHO05D000686 2.2e-37 159.1 123 74.8
Potri.011G064500 Populus trichocarpa HOM05D000566 ORTHO05D000686 2.2e-37 159.1 128 71.1
GSVIVG01021189001 Vitis vinifera HOM05D000566 ORTHO05D000686 2.9e-37 158.7 115 75.7
Gohir.A06G125600 Gossypium hirsutum HOM05D000566 ORTHO05D000686 6.5e-37 157.5 126 72.2
Gohir.D06G136000 Gossypium hirsutum HOM05D000566 ORTHO05D000686 6.5e-37 157.5 126 72.2
Gorai.010G158300 Gossypium raimondii HOM05D000566 ORTHO05D000686 6.5e-37 157.5 126 72.2
QL05p046274 Quercus lobata HOM05D000566 ORTHO05D000686 8.5e-37 157.1 127 70.9
CSS0042841 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D000686 1.4e-36 156.4 129 68.2
Oeu043097.1 Olea europaea HOM05D000566 ORTHO05D000686 1.4e-36 156.4 132 70.5
Hma1.2p1_0155F.1_g068260 Hydrangea macrophylla HOM05D000566 ORTHO05D000686 1.9e-36 156.0 128 67.2
Gohir.A10G031200 Gossypium hirsutum HOM05D000566 ORTHO05D000686 4.2e-36 154.8 123 72.4
QL01p004163 Quercus lobata HOM05D000566 ORTHO05D000686 5.5e-36 154.5 126 69.8
Solyc02g077090.4 Solanum lycopersicum HOM05D000566 ORTHO05D000686 7.2e-36 154.1 128 68.8
Sopen02g022020 Solanum pennellii HOM05D000566 ORTHO05D000686 7.2e-36 154.1 128 68.8
Atru.chr10.1701 Acer truncatum HOM05D000566 ORTHO05D000686 2.7e-35 152.1 125 72.8
Gohir.D10G032000 Gossypium hirsutum HOM05D000566 ORTHO05D000686 3.6e-35 151.8 123 70.7
Gorai.011G033700 Gossypium raimondii HOM05D000566 ORTHO05D000686 3.6e-35 151.8 123 70.7
TAR626G1519 Trochodendron aralioides HOM05D000566 ORTHO05D000686 3.6e-35 151.8 123 73.2
Duzib160G0685 Durio zibethinus HOM05D000566 ORTHO05D000686 6.1e-35 151.0 126 71.4
Oeu062344.1 Olea europaea HOM05D000566 ORTHO05D000686 1.0e-34 150.2 132 68.9
RcHm_v2.0_Chr5g0010311 Rosa chinensis HOM05D000566 ORTHO05D000686 2.3e-34 149.1 126 68.3
Actinidia16809 Actinidia chinensis HOM05D000566 ORTHO05D000686 3.9e-34 148.3 124 64.5
FAN11G2369 Fragaria x ananassa HOM05D000566 ORTHO05D000686 3.9e-34 148.3 127 67.7
FvH4_3g08000 Fragaria vesca HOM05D000566 ORTHO05D000686 5.1e-34 147.9 127 66.9
Peaxi162Scf00223g00811 Petunia axillaris HOM05D000566 ORTHO05D000686 5.1e-34 147.9 125 64.8
PGSC0003DMG400010246 Solanum tuberosum HOM05D000566 ORTHO05D000686 5.1e-34 147.9 128 67.2
Sc05g0007200 Simmondsia chinensis HOM05D000566 ORTHO05D000686 1.5e-33 146.4 127 63.8
Migut.H01453 Erythranthe guttata HOM05D000566 ORTHO05D000686 2.0e-33 146.0 134 65.7
CANSAT35G1676 Cannabis sativa HOM05D000566 ORTHO05D000686 3.3e-33 145.2 137 63.5
Manes.16G037100 Manihot esculenta HOM05D000566 ORTHO05D000686 3.3e-33 145.2 124 66.9
Phvul.003G058200 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 3.3e-33 145.2 124 69.4
Nn1g09060 Nelumbo nucifera HOM05D000566 ORTHO05D000686 4.4e-33 144.8 130 65.4
HanXRQChr07g0186921 Helianthus annuus HOM05D000566 ORTHO05D000686 5.7e-33 144.4 136 64.0
Cc02_g14630 Coffea canephora HOM05D000566 ORTHO05D000686 1.7e-32 142.9 133 62.4
Rhsim13G0191700 Rhododendron simsii HOM05D000566 ORTHO05D000686 1.7e-32 142.9 132 60.6
MSTRG.13214 Avicennia marina HOM05D000566 ORTHO05D000686 2.8e-32 142.1 132 62.9
Sed0016456 Sechium edule HOM05D000566 ORTHO05D000686 3.7e-32 141.7 122 67.2
Lsat_1_v5_gn_4_50000 Lactuca sativa HOM05D000566 ORTHO05D000686 4.8e-32 141.4 123 66.7
Lj1A1194T86 Lonicera japonica HOM05D000566 ORTHO05D000686 3.1e-31 138.7 126 64.3
HanXRQChr15g0490581 Helianthus annuus HOM05D000566 ORTHO05D000686 5.3e-31 137.9 140 58.6
PGR042G0221 Punica granatum HOM05D000566 ORTHO05D000686 9.1e-31 137.1 123 63.4
MSTRG.7395 Avicennia marina HOM05D000566 ORTHO05D000686 2.0e-30 136.0 131 62.6
Oeu012061.1 Olea europaea HOM05D000566 ORTHO05D000686 2.6e-30 135.6 127 62.2
Gohir.A09G074100 Gossypium hirsutum HOM05D000566 ORTHO05D000686 3.5e-30 135.2 129 63.6
FAN25G1525 Fragaria x ananassa HOM05D000566 ORTHO05D000686 7.7e-30 134.0 93 76.3
TWI38G1373 Tripterygium wilfordii HOM05D000566 ORTHO05D000686 7.7e-30 134.0 125 65.6
Hund21185 Selenicereus undatus HOM05D000566 ORTHO05D000686 1.0e-29 133.7 120 61.7
Cpa.g.sc7.63 Carica papaya HOM05D000566 ORTHO05D000686 1.3e-29 133.3 128 64.1
Ciclev10014629m.g Citrus clementina HOM05D000566 ORTHO05D000686 1.3e-29 133.3 133 61.7
VMungo0251G3123 Vigna mungo HOM05D000566 ORTHO05D000686 1.3e-29 133.3 124 62.9
Glyma.07G205100 Glycine max HOM05D000566 ORTHO05D000686 1.7e-29 132.9 122 64.8
Gorai.006G088700 Gossypium raimondii HOM05D000566 ORTHO05D000686 1.7e-29 132.9 129 62.8
SGA_v2.0_scaffold1G00029 Striga asiatica HOM05D000566 ORTHO05D000686 2.2e-29 132.5 136 60.3
Glyma.13G171100 Glycine max HOM05D000566 ORTHO05D000686 3.8e-29 131.7 126 61.9
Aqoxy4G00467 Aquilegia oxysepala HOM05D000566 ORTHO05D000686 8.5e-29 130.6 148 53.4
unitig_0.g710 Utricularia gibba HOM05D000566 ORTHO05D000686 8.5e-29 130.6 134 58.2
Gohir.D09G073800 Gossypium hirsutum HOM05D000566 ORTHO05D000686 1.1e-28 130.2 129 62.8
Lj4g0012403 Lotus japonicus HOM05D000566 ORTHO05D000686 1.1e-28 130.2 130 57.7
arahy.Tifrunner.gnm1.ann1.BA5IRE Arachis hypogaea HOM05D000566 ORTHO05D000686 2.5e-28 129.0 138 58.7
arahy.Tifrunner.gnm1.ann1.MK6WNS Arachis hypogaea HOM05D000566 ORTHO05D000686 2.5e-28 129.0 138 58.7
MBI06_g45389_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 4.2e-28 128.3 136 58.1
DCAR_005237 Daucus carota HOM05D000566 ORTHO05D000686 7.2e-28 127.5 123 62.6
HPP92_004057 Vanilla planifolia HOM05D000878 ORTHO05D000686 9.4e-28 127.1 125 60.0
Lj6g0010625 Lotus japonicus HOM05D000566 ORTHO05D000686 2.1e-27 125.9 114 64.0
SalBow5G1331 Salvia bowleyana HOM05D000566 ORTHO05D000686 2.1e-27 125.9 120 61.7
SalBow8G1882 Salvia bowleyana HOM05D000566 ORTHO05D000686 2.1e-27 125.9 129 61.2
SGA_v2.0_scaffold109G31086 Striga asiatica HOM05D000566 ORTHO05D000686 2.1e-27 125.9 131 61.1
HPP92_004045 Vanilla planifolia HOM05D000566 ORTHO05D000686 2.1e-27 125.9 125 60.0
Glyma.13G231000 Glycine max HOM05D000566 ORTHO05D000686 2.7e-27 125.6 123 58.5
DCAR_028012 Daucus carota HOM05D000566 ORTHO05D000686 3.6e-27 125.2 124 58.9
ECA234G0195 Erigeron canadensis HOM05D000566 ORTHO05D000686 3.6e-27 125.2 80 80.0
PSO063G1141 Papaver somniferum HOM05D000566 ORTHO05D000686 6.1e-27 124.4 130 54.6
Migut.M01051 Erythranthe guttata HOM05D000566 ORTHO05D000686 1.8e-26 122.9 136 58.1
MBI07_g21407_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 1.8e-26 122.9 129 58.9
VMungo0540G1475 Vigna mungo HOM05D000566 ORTHO05D000686 3.0e-26 122.1 121 58.7
Phvul.006G177200 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 5.2e-26 121.3 121 58.7
COL.COLO4_31322 Corchorus olitorius HOM05D000566 ORTHO05D000686 8.8e-26 120.6 114 64.0
Lalb_Chr05g0218761 Lupinus albus HOM05D000566 ORTHO05D000686 1.1e-25 120.2 121 58.7
Medtr4g087780 Medicago truncatula HOM05D000566 ORTHO05D000686 2.0e-25 119.4 132 56.8
Ca_26052_v3 Cicer arietinum L. HOM05D000566 ORTHO05D000686 2.6e-25 119.0 131 56.5
SHI54757 Sapria himalayana HOM05D000566 ORTHO05D000686 3.3e-25 118.6 124 55.6
Glyma.15G081500 Glycine max HOM05D000566 ORTHO05D000686 4.4e-25 118.2 121 57.9
Lj2C297T7 Lonicera japonica HOM05D000566 ORTHO05D000686 4.4e-25 118.2 89 70.8
unitig_749.g13662 Utricularia gibba HOM05D000566 ORTHO05D000686 5.7e-25 117.9 133 56.4
PSO782G1797 Papaver somniferum HOM05D000566 ORTHO05D000686 2.8e-24 115.5 119 56.3
MSTRG.14725 Avicennia marina HOM05D000566 ORTHO05D000686 6.3e-24 114.4 126 61.1
Hund23959 Selenicereus undatus HOM05D000566 ORTHO05D000686 6.3e-24 114.4 127 55.9
Eucgr.E02711 Eucalyptus grandis HOM05D000566 ORTHO05D000686 1.4e-23 113.2 123 52.0
TPR.G16257 Trifolium pratense HOM05D000566 ORTHO05D000686 1.8e-23 112.8 130 55.4
Ah.14g087210 Amaranthus hybridus HOM05D000566 ORTHO05D000686 2.4e-23 112.5 134 55.2
CDE09G0256 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 5.3e-23 111.3 124 54.8
Ah.09g233700 Amaranthus hybridus HOM05D000566 ORTHO05D000686 1.2e-22 110.2 123 55.3
CDE02G4350 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 3.5e-22 108.6 123 54.5
CDE08G0428 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 4.5e-22 108.2 123 53.7
Lalb_Chr16g0384241 Lupinus albus HOM05D000566 ORTHO05D000686 5.9e-22 107.8 113 57.5
unitig_26.g9352 Utricularia gibba HOM05D000566 ORTHO05D000686 5.9e-22 107.8 117 60.7
MBI06_g18004_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 1.7e-21 106.3 103 62.1
Zm00001eb158220 Zea mays HOM05D000566 ORTHO05D000686 2.2e-21 105.9 131 50.4
Sed0004567 Sechium edule HOM05D000566 ORTHO05D000686 3.8e-21 105.1 118 60.2
DCAR_007963 Daucus carota HOM05D000566 ORTHO05D000686 8.5e-21 104.0 127 54.3
C07p49840 Brassica napus HOM05D000566 ORTHO05D000686 1.9e-20 102.8 141 46.8
BolC7t45486H Brassica oleracea HOM05D000566 ORTHO05D000686 1.9e-20 102.8 141 46.8
arahy.Tifrunner.gnm1.ann1.274M2K Arachis hypogaea HOM05D000566 ORTHO05D000686 2.5e-20 102.4 113 53.1
arahy.Tifrunner.gnm1.ann1.XU6ZBK Arachis hypogaea HOM05D000566 ORTHO05D000686 2.5e-20 102.4 113 53.1
A03p51420 Brassica napus HOM05D000566 ORTHO05D000686 2.5e-20 102.4 141 46.8
Aa31LG6G1300 Aethionema arabicum HOM05D000566 ORTHO05D000686 7.2e-20 100.9 140 47.9
BraA03t14226Z Brassica rapa HOM05D000566 ORTHO05D000686 1.2e-19 100.1 141 46.8
Os01g0651932 Oryza sativa ssp. japonica HOM05D000566 ORTHO05D000686 1.2e-19 100.1 127 50.4
AT4G18570 Arabidopsis thaliana HOM05D000566 ORTHO05D000686 1.6e-19 99.8 140 47.1
BcaNung03816 Brassica carinata HOM05D000566 ORTHO05D000686 1.6e-19 99.8 128 50.8
DCAR_004017 Daucus carota HOM05D000566 ORTHO05D008456 2.1e-19 99.4 123 49.6
AL7G35710 Arabidopsis lyrata HOM05D000566 ORTHO05D000686 3.6e-19 98.6 136 49.3
EL10Ac8g20506 Beta vulgaris HOM05D000566 ORTHO05D000686 3.6e-19 98.6 125 52.0
Thhalv10024648m.g Eutrema salsugineum HOM05D000566 ORTHO05D000686 4.7e-19 98.2 135 50.4
Zm00001eb270720 Zea mays HOM05D000566 ORTHO05D000686 4.7e-19 98.2 128 49.2
unitig_61.g26086 Utricularia gibba HOM05D000566 ORTHO05D000686 1.4e-18 96.7 129 54.3
ATR0602G291 Amborella trichopoda HOM05D000566 ORTHO05D000686 2.3e-18 95.9 128 47.7
Carub.0007s2267 Capsella rubella HOM05D000566 ORTHO05D000686 2.6e-17 92.4 142 43.7
Sp7g15470 Schrenkiella parvula HOM05D000566 ORTHO05D000686 1.3e-16 90.1 133 45.9
BraA01t01004Z Brassica rapa HOM05D000566 ORTHO05D000686 2.8e-16 89.0 126 49.2
A01p10580 Brassica napus HOM05D000566 ORTHO05D000686 3.7e-16 88.6 126 49.2
CARHR225410 Cardamine hirsuta HOM05D000566 ORTHO05D000686 3.7e-16 88.6 141 43.3
C01p12520 Brassica napus HOM05D000566 ORTHO05D000686 6.3e-16 87.8 126 48.4
THA.LOC104806152 Tarenaya hassleriana HOM05D000566 ORTHO05D000686 8.3e-16 87.4 138 44.9
BcaC09g51488 Brassica carinata HOM05D000566 ORTHO05D000686 1.1e-15 87.0 126 48.4
BolC1t01226H Brassica oleracea HOM05D000566 ORTHO05D000686 1.1e-15 87.0 126 48.4
BraA08t33372Z Brassica rapa HOM05D000566 ORTHO05D000686 4.1e-15 85.1 136 42.6
BcaB04g18482 Brassica carinata HOM05D000566 ORTHO05D000686 2.7e-14 82.4 134 44.0
BcaC01g00548 Brassica carinata HOM05D000566 ORTHO05D000686 1.7e-13 79.7 130 42.3
C03p81330 Brassica napus HOM05D000566 ORTHO05D000686 1.7e-13 79.7 130 42.3
BolC3t20398H Brassica oleracea HOM05D000566 ORTHO05D000686 1.7e-13 79.7 130 42.3
Zm00001eb296520 Zea mays HOM05D000566 ORTHO05D000686 8.5e-13 77.4 165 38.2
A08p13870 Brassica napus HOM05D000566 ORTHO05D000686 5.2e-10 68.2 136 38.2
Psat7g118840 Pisum sativum HOM05D000566 ORTHO05D000686 2.6e-09 65.9 101 48.5


User provided reference genes

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