Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.6e-62 241.9 124 100.0
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 8.7e-50 200.3 121 84.3
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 1.2e-27 126.7 122 62.3
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 8.8e-26 120.6 121 55.4
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 1.5e-25 119.8 128 58.6
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 1.1e-23 113.6 122 54.1
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 4.1e-23 111.7 122 56.6
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 5.3e-23 111.3 117 54.7
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 3.8e-21 105.1 121 52.9
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 1.5e-20 103.2 125 50.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 2.5e-20 102.4 123 52.0
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.2e-19 100.1 124 52.4
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 1.2e-19 100.1 121 52.1
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 1.2e-19 100.1 121 49.6
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.6e-19 99.8 122 54.1
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 2.7e-19 99.0 121 50.4
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 3.6e-19 98.6 121 47.1
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 6.1e-19 97.8 121 47.1
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 8.0e-19 97.4 134 50.0
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.8e-18 96.3 67 65.7
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 2.3e-18 95.9 116 50.9
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 2.3e-18 95.9 121 50.4
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 3.0e-18 95.5 118 47.5
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 3.0e-18 95.5 123 48.0
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 6.8e-18 94.4 125 52.0
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 6.8e-18 94.4 70 65.7
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 8.8e-18 94.0 122 48.4
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 8.8e-18 94.0 71 67.6
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 1.5e-17 93.2 122 48.4
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 2.6e-17 92.4 121 49.6
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 5.7e-17 91.3 130 46.2
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 9.8e-17 90.5 81 58.0
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 9.8e-17 90.5 116 47.4
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 1.3e-16 90.1 72 63.9
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 1.7e-16 89.7 123 49.6
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 2.2e-16 89.4 124 46.0
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 8.3e-16 87.4 120 49.2
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.1e-15 87.0 70 60.0
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 1.1e-15 87.0 121 46.3
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 1.8e-15 86.3 122 46.7
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 1.8e-15 86.3 129 44.2
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 3.1e-15 85.5 47 83.0
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 4.1e-15 85.1 121 47.1
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 5.4e-15 84.7 79 58.2
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 5.4e-15 84.7 79 58.2
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 7.0e-15 84.3 121 46.3
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 9.1e-15 84.0 73 61.6
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 9.1e-15 84.0 95 46.3
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 1.2e-14 83.6 63 66.7
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.2e-14 83.6 67 62.7
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 1.2e-14 83.6 123 48.0
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 1.6e-14 83.2 108 47.2
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.6e-14 83.2 97 48.5
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 2.0e-14 82.8 47 78.7
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 3.5e-14 82.0 125 44.8
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 3.5e-14 82.0 67 61.2
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 3.5e-14 82.0 121 47.1
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 3.5e-14 82.0 95 45.3
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 5.9e-14 81.3 117 47.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 7.7e-14 80.9 125 46.4
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 7.7e-14 80.9 126 44.4
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 7.7e-14 80.9 125 43.2
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 7.7e-14 80.9 82 53.7
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 1.0e-13 80.5 65 64.6
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.0e-13 80.5 123 43.9
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 1.3e-13 80.1 108 46.3
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 1.3e-13 80.1 108 46.3
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 1.3e-13 80.1 52 69.2
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.7e-13 79.7 125 44.0
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.7e-13 79.7 70 58.6
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 2.2e-13 79.3 128 47.7
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 2.9e-13 79.0 121 44.6
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 2.9e-13 79.0 51 68.6
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 5.0e-13 78.2 71 57.7
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 6.5e-13 77.8 61 60.7
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 8.5e-13 77.4 80 53.8
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 1.1e-12 77.0 125 44.0
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 2.5e-12 75.9 121 40.5
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 3.2e-12 75.5 49 69.4
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 4.2e-12 75.1 71 56.3
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 9.4e-12 73.9 113 40.7
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 1.6e-11 73.2 122 41.8
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 2.7e-11 72.4 45 71.1
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 3.6e-11 72.0 59 61.0
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 4.7e-11 71.6 121 38.8
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 4.7e-11 71.6 105 44.8
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.0e-10 70.5 118 42.4
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 2.3e-10 69.3 45 68.9
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 3.0e-10 68.9 45 64.4
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 6.8e-10 67.8 46 63.0
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 6.8e-10 67.8 47 63.8
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.2e-09 67.0 57 56.1
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 3.4e-09 65.5 38 71.1
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 3.4e-09 65.5 46 60.9
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 4.4e-09 65.1 89 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.2e-08 62.8 63 46.0
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 2.8e-08 62.4 45 60.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.4e-07 60.1 34 70.6
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 7.0e-07 57.8 34 70.6
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 9.2e-07 57.4 87 42.5
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 3.5e-06 55.5 26 84.6


User provided reference genes

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