Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.1e-68 263.1 128 100.0
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 8.1e-67 256.9 128 97.7
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 1.6e-62 242.7 127 89.0
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 1.3e-61 239.6 128 89.8
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 8.7e-61 236.9 126 88.1
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 1.1e-60 236.5 126 86.5
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 1.5e-60 236.1 128 87.5
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 1.5e-60 236.1 128 86.7
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 1.5e-60 236.1 126 87.3
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 2.5e-60 235.3 128 86.7
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 2.5e-60 235.3 128 86.7
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 3.3e-60 235.0 128 86.7
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 4.3e-60 234.6 128 86.7
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 4.3e-60 234.6 128 85.9
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 4.3e-60 234.6 128 85.9
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 5.6e-60 234.2 128 85.9
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 5.6e-60 234.2 128 85.9
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 5.6e-60 234.2 126 86.5
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 7.4e-60 233.8 128 85.9
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 7.4e-60 233.8 128 85.2
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 9.6e-60 233.4 128 85.9
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 1.6e-59 232.6 128 85.2
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.6e-59 232.6 126 85.7
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.6e-59 232.6 128 85.2
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.6e-59 232.6 128 85.2
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 1.6e-59 232.6 128 85.2
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.6e-59 232.6 128 85.2
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 2.1e-59 232.3 128 85.9
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 3.7e-59 231.5 126 85.7
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 3.7e-59 231.5 128 84.4
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 4.8e-59 231.1 127 85.0
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 6.2e-59 230.7 128 83.6
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 6.2e-59 230.7 126 84.9
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 6.2e-59 230.7 128 84.4
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 1.4e-58 229.6 128 84.4
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 1.4e-58 229.6 128 84.4
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 2.4e-58 228.8 126 84.9
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 2.4e-58 228.8 128 84.4
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 2.4e-58 228.8 128 84.4
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 3.1e-58 228.4 126 84.1
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 3.1e-58 228.4 125 85.6
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 4.0e-58 228.0 128 82.0
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 6.9e-58 227.3 126 83.3
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 9.0e-58 226.9 126 83.3
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.5e-57 226.1 128 83.6
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.5e-57 226.1 128 79.7
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 4.5e-57 224.6 126 81.0
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 1.0e-56 223.4 128 80.5
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.3e-56 223.0 126 81.7
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.7e-56 222.6 127 79.5
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.7e-56 222.6 125 81.6
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 2.2e-56 222.2 126 82.5
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 2.2e-56 222.2 126 81.0
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 2.2e-56 222.2 126 81.0
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 2.9e-56 221.9 128 79.7
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 4.9e-56 221.1 128 79.7
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 6.5e-56 220.7 118 87.3
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 1.1e-55 219.9 128 79.7
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 1.4e-55 219.5 128 80.5
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 1.4e-55 219.5 128 79.7
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.9e-55 219.2 128 78.1
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.5e-55 218.8 128 78.9
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 3.2e-55 218.4 127 78.0
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 3.2e-55 218.4 128 80.5
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 5.5e-55 217.6 128 78.1
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 5.5e-55 217.6 128 78.1
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 5.5e-55 217.6 128 78.1
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 5.5e-55 217.6 128 78.1
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 5.5e-55 217.6 128 78.1
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 7.1e-55 217.2 128 77.3
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 7.1e-55 217.2 128 78.1
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.2e-54 216.5 128 77.3
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.7e-54 215.3 124 83.1
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 3.5e-54 214.9 128 76.6
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 7.9e-54 213.8 142 73.2
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.0e-53 211.8 126 77.8
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 8.7e-53 210.3 128 75.0
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 1.9e-52 209.1 128 73.4
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 2.5e-52 208.8 127 78.7
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.3e-51 206.5 127 73.2
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 6.2e-51 204.1 111 84.7
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 1.8e-50 202.6 109 84.4
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 4.1e-50 201.4 108 88.9
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 8.4e-48 193.7 125 64.8
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 5.5e-47 191.0 135 71.9
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 2.1e-46 189.1 110 80.0
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 2.7e-46 188.7 108 81.5
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.8e-45 186.0 97 88.7
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 6.7e-45 184.1 155 60.0
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 8.7e-45 183.7 107 76.6
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 1.0e-40 170.2 100 80.0
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 5.1e-37 157.9 88 84.1
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 3.3e-36 155.2 88 80.7
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 3.7e-35 151.8 88 80.7
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 8.2e-35 150.6 128 53.1
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 8.5e-32 140.6 88 73.9
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 5.5e-31 137.9 98 63.3
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 5.1e-29 131.3 125 48.8
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 9.7e-28 127.1 108 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 4.1e-26 121.7 88 61.4
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.0e-20 102.8 53 84.9
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 1.7e-19 99.8 74 62.2
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 8.2e-19 97.4 58 81.0
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 5.3e-18 94.7 57 78.9
EL10Ac7g17323 Beta vulgaris HOM05D007024 ORTHO05D008865 6.8e-13 77.8 40 85.0
RcHm_v2.0_Chr4g0422601 Rosa chinensis HOM05D007024 ORTHO05D008865 3.2e-07 58.9 29 82.8
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 4.2e-07 58.5 127 30.7
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 5.5e-07 58.2 129 29.5
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 7.2e-07 57.8 127 31.5
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.7e-06 55.8 127 31.5


User provided reference genes

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